Hello –


APBS can definitely perform calculations on more than one DNA molecule.  Please explain your assumption about the one DNA limitation.



Nathan Baker
Pacific Northwest National Laboratory
Tel:  509-375-3997


From: Qi Xia [mailto:xiayu0403@gmail.com]
Sent: Friday, August 19, 2011 10:54 AM
To: apbs-users@lists.sourceforge.net
Cc: Xiangyun Qiu
Subject: [Apbs-users] How to calculate multiple DNAs in apbs


Dear Users,


Our group is trying to calculate the case for multiple DNAs and ions, but I found out apbs can only do the case for one DNA. Is there any way to use apbs to calculate multiple DNAs condition, like using boundary conditions or something else?  Thanks a lot.



Qi Xia