From: Onur ALTEN <onuralten@ha...> - 2010-09-28 08:40:02
Dear users<br _moz_dirty="" />
I am Onur Alten from Hacettepe University. I have used 1AIK Pdb structure for docking. I have used biological unit of 1AIK.<br _moz_dirty="" />
1AIK structure contains 3 N -helix and 3 C-helix. It is a hexamer.<br _moz_dirty="" />
Hydrophobic pocket of 1AIK is important for docking area. To expose
this pocket ,I remove one of the C helices. After than i upload this
pentamer structures to pdb2pqr server and it gives me a pqr file. But
this pqr file contains only one N -helix and one C-helix. And I can't
see the pentamer molecule. What can I do? Where is the pentamer
structure? Pentamer structure is necessarily for docking .
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