From: Michel Espinoza-Fonseca <mef@dd...> - 2005-11-14 21:06:04
I have a tiny question. I've been using VMD to visualize the =
electrostatic potentials I'm calculating with APBS. Now I'm running some =
calculations to find the condensation of negative charges around a given =
protein. In summary, I have two questions: first, I saw the example of =
charge condensation around DNA, but DNA possesses many negative charges, =
while my protein possesses many positive ones. I would like to know if =
the DNA input file is a good starting for my calculations (e.g., if I =
must modify something). Second, I've been trying to visualize the =
isosurfaces with VMD, but I really don't know what the "isosurface" =
value means when I analyze the charge density. I know you're not VMD =
developers, but I guess you have experience on this issue.
Thank you very much!
PS. I'm sorry, I posted my message with other subject (my mistake!)
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