Thread: [Apbs-users] pH dependent protein-protein interaction
Biomolecular electrostatics software
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From: Valodymyr Nechyporuk-Z. <zl...@un...> - 2004-07-09 17:25:37
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Dear users, I have two proteins, which bind one with another in pH dependent manner. We think pH of local environment can sufficiently change the binding. Mg 2+ creates the coordinate bridges between the proteins. Can APBS help me for modelling of pH effect in this case? Sincerely yours, Volodymyr Nechyporuk-Zloy |
From: Nathan B. <ba...@bi...> - 2004-07-12 12:55:04
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Dear Dr. Nechyporuk-Zloy -- We're currently working with Jens Nielsen (Univ. College Dublin) to develop a pKa framework which works well with APBS. In the meantime, I'd suggest that you contact Jens to use his existing tools. Good luck, Nathan Baker Valodymyr Nechyporuk-Zloy wrote: > Dear users, > > I have two proteins, which bind one with another in pH dependent manner. We > think pH of local environment can sufficiently change the binding. Mg 2+ > creates the coordinate bridges between the proteins. Can APBS help me for > modelling of pH effect in this case? > > > Sincerely yours, > > Volodymyr Nechyporuk-Zloy > _______________________________________________ > apbs-users mailing list > apb...@ch... > http://cholla.wustl.edu/mailman/listinfo/apbs-users -- Nathan A. Baker, Assistant Professor Washington University in St. Louis School of Medicine Dept. of Biochemistry and Molecular Biophysics Center for Computational Biology 700 S. Euclid Ave., Campus Box 8036, St. Louis, MO 63110 Phone: (314) 362-2040, Fax: (314) 362-0234 URL: http://www.biochem.wustl.edu/~baker |