Thread: [Apbs-users] APBS not reading files from pdb2pqr server
Biomolecular electrostatics software
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From: Patrick W. <pat...@ca...> - 2008-02-25 22:04:47
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Hi, I've noticed recently that the output from the pdb2pqr server is slightly different then in the past (I last used it ~1 year ago), and now I can't seem to get APBS (versions 0.4.0 and 0.5.0) to read the pqr files from the server. Do I need to uprade to a new version of APBS? If so, which one? Thanks Patrick L. Wintrode, Assistant Professor Department of Physiology & Biophysics School of Medicine, Case Western Reserve University 10900 Euclid Avenue Cleveland, OH 44106-4970 Phone: 216-368-3178 Fax: 216-368-3952 E-mail: pat...@ca... |
From: Nathan B. <ba...@cc...> - 2008-02-26 17:38:26
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Hello -- > I've noticed recently that the output from the pdb2pqr server is > slightly different then in the past (I last used it ~1 year ago), Yes, PDB2PQR has been upgraded at least once in the past year. > and > now I can't seem to get APBS (versions 0.4.0 and 0.5.0) to read the pqr > files from the server. Can you say a bit more about the types of errors you are encountering? > Do I need to uprade to a new version of APBS? If so, which one? The latest version of APBS is 0.5.1. It contains both new features and bug fixes, so upgrading is probably a good idea. Thanks, Nathan > Thanks > > Patrick L. Wintrode, Assistant Professor > Department of Physiology & Biophysics > School of Medicine, Case Western Reserve University > 10900 Euclid Avenue > Cleveland, OH 44106-4970 > Phone: 216-368-3178 > Fax: 216-368-3952 > E-mail: pat...@ca... > > ------------------------------------------------------------------------- > This SF.net email is sponsored by: Microsoft > Defy all challenges. Microsoft(R) Visual Studio 2008. > http://clk.atdmt.com/MRT/go/vse0120000070mrt/direct/01/ > _______________________________________________ > apbs-users mailing list > apb...@li... > https://lists.sourceforge.net/lists/listinfo/apbs-users > -- Associate Professor, Dept. of Biochemistry and Molecular Biophysics Center for Computational Biology, Washington University in St. Louis Web: http://cholla.wustl.edu/ |