Sorry but this is not strictly related to the use of APBS. I want to apply APBS to a protein/membrane system to calculate the binding energy, but without too much prior experience in this field, I don't know how to construct an all-atom molecular model for the lipid bilayer. The protein being analyzed is not embedded within the membrane, but is peripherally positioned to the bilayer at about 3A. The plan includes changing lipid composition (PS/PC ratio) to see different binding energies. The model need not be very accurate; a raw one will do. Any help will be most appreciated.
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