Amplicon_Sequencing_Worfklow Code
Analyzing amplicon data from sequences to stats
Brought to you by:
hlfreund
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Tree [4cfdfa] master / History
| File | Date | Author | Commit |
|---|---|---|---|
| Amplicon_Stats_Scripts | 2021-10-06 |
H.L. Freund
|
[ae9eae] uploading files |
| Sequence_Processing_Scripts | 2021-10-06 |
H.L. Freund
|
[ae9eae] uploading files |
| README.md | 2021-10-09 |
H.L. Freund
|
[e2e909] added line to README |
| amplicon_workflow.Rmd | 2021-12-12 |
H.L. Freund
|
[4cfdfa] updating workflow in this repo |
| amplicon_workflow.html.gz | 2021-12-12 |
H.L. Freund
|
[4cfdfa] updating workflow in this repo |
Read Me
Amplicon Sequencing Workflow!
This repository contains a worfklow and the associated scripts for analyzing 16S or ITS amplicon sequencing data.
To follow this workflow entirely, you must have the following:
- R/Rstudio installed
- a beefy computer or access to a high performance computing cluster
- some bash experience
- demultiplexed sequence data
