From: Gabriel A. G. N. <gar...@ho...> - 2012-06-05 18:36:44
|
I have emundtii.fna files, and emundtii.sff emundtii.qual obtained from a sequencer 454. Minimus run as follows: >toAmos -s emundtii.fna -q emundtii.qual -o emundtii.afg >minimus emundtii Until there all okay. But when I try to run bambus2: > goBambus2 emundtii.bnk emundtiiscaff --all --contigs mate pair info not present! Using Minimo is the same error: > Minimo emundtii.fna -D MIN_LEN=40 -D MIN_IDENT=97 -D FASTA_EXP=1 > bank-transact -cf -m emundtii-contigs.afg -b emundtii.bnk > goBambus2 emundtii.bnk emundtiiscaff -all -reads mate pair info not present! Could someone help me with this? Do not know if I'm doing something wrong or I'm missing some step or really lack the mate pair information |