I could not install hawkeye because configure failed to find QT3,
which is installed on my system. I've tried all different combos
of --with-Qt-lib that I could think of.
See config.h for further configuration information.
Email <amos-help@lists.sourceforge.net> with questions and bug reports.
WARNING! Qt3 toolkit was not found but is required to run AMOS GUIs
install Qt3 or locate Qt3 with configure to build GUIs
see config.log for more information on what went wrong
It looks like you have the Qt runtime installed (lib directory), but not the development files (include directory). These are often installed as separate packages in linux. In Redhat, for example, there are separate qt and qt-devel rpms. If you can't install the rpm, you can also build from source. The latest Qt 3.x linux source is available from Trolltech at:
Hi,
I have installed qt3 from the ftp site you have provided above. But I still get an error while configuring amos; here is the config results: KINDLY ADVICE
See config.h for further configuration information.
Email <amos-help@lists.sourceforge.net> with questions and bug reports.
WARNING! nucmer was not found but is required to run AMOScmp
install nucmer if planning on using AMOScmp
WARNING! delta-filter was not found but is required to run AMOScmp-shortReads-alignmentTrimmed
install delta-filter if planning on using AMOScmp-shortReads-alignmentTrimmed
WARNING! show-coords was not found but is required to run minimus2
install show-coords if planning on using minimus2
WARNING! Qt3 toolkit was not found but is required to run AMOS GUIs
install Qt3 or locate Qt3 with configure to build GUIs
see config.log for more information on what went wrong
WARNING! libz was not found but is required for certain read trace IO
install libz if planning on using compressed trace formats
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Hi,
When I run the configure of amos-3.0.0,I get the information like this:
- AMOS Assembler 2.0.8 Configuration Results -
C compiler: gcc -g -O2
C++ compiler: g++ -g -O2
GCC version: gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-46)
Host System type: x86_64-unknown-linux-gnu
Install prefix: /hpc/home/usm3/zhigangchen/amos3.0.0/amos-3.0.0
Install eprefix: ${prefix}
See config.h for further configuration information.
Email <amos-help@lists.sourceforge.net> with questions and bug reports.
WARNING! nucmer was not found but is required to run AMOScmp
install nucmer if planning on using AMOScmp
WARNING! delta-filter was not found but is required to run AMOScmp-shortReads-alignmentTrimmed
install delta-filter if planning on using AMOScmp-shortReads-alignmentTrimmed
WARNING! show-coords was not found but is required to run minimus2
install show-coords if planning on using minimus2
Where I can find nucmer 、delta-filter 、show-coords and install them in my computer .
Thanks in advance.
Chen
If you would like to refer to this comment somewhere else in this project, copy and paste the following link:
Hi,
I could not install hawkeye because configure failed to find QT3,
which is installed on my system. I've tried all different combos
of --with-Qt-lib that I could think of.
Thanks in advance!
Martin
-- AMOS Assembler 2.0.4 Configuration Results --
C compiler: gcc -g -O2
C++ compiler: g++ -g -O2
GCC version: gcc (GCC) 3.4.2
Host System type: i686-pc-linux-gnu
Install prefix: /home/shumwaym/packages/amos
Install eprefix: ${prefix}
See config.h for further configuration information.
Email <amos-help@lists.sourceforge.net> with questions and bug reports.
WARNING! Qt3 toolkit was not found but is required to run AMOS GUIs
install Qt3 or locate Qt3 with configure to build GUIs
see config.log for more information on what went wrong
hera> grep -i QT config.log
$ ./configure --with-Qt-dir=/usr/lib/qt3 --with-Qt-lib=qt-mt
configure:8111: checking for Qt
configure:8370: checking whether Qt works
ac_cv_qt_test_result=no
BUILD_QT_FALSE=''
BUILD_QT_TRUE='#'
QT_CXXFLAGS=''
QT_DIR=''
QT_LIBS=''
QT_MOC=''
QT_UIC=''
hera> ll /usr/lib/qt3/
total 48
drwxr-xr-x 7 root root 4096 Aug 20 11:01 .
drwxr-xr-x 87 root root 24576 Aug 31 07:04 ..
drwxr-xr-x 2 root root 4096 Aug 20 11:01 bin
drwxr-xr-x 2 root root 4096 Aug 20 11:01 etc
drwxr-xr-x 2 root root 4096 Aug 20 11:01 lib
drwxr-xr-x 3 root root 4096 Aug 20 11:01 plugins
drwxr-xr-x 2 root root 4096 Aug 20 11:01 translations
hera> ll /usr/lib/qt3/lib/
total 8608
drwxr-xr-x 2 root root 4096 Aug 20 11:01 .
drwxr-xr-x 7 root root 4096 Aug 20 11:01 ..
lrwxrwxrwx 1 root root 17 Aug 20 11:01 libqt-mt.so.3 -> libqt-mt.so.3.3.1
lrwxrwxrwx 1 root root 17 Aug 20 11:01 libqt-mt.so.3.3 -> libqt-mt.so.3.3.1
-rwxr-xr-x 1 root root 8528526 Apr 3 09:07 libqt-mt.so.3.3.1
lrwxrwxrwx 1 root root 15 Aug 20 11:01 libqui.so.1 -> libqui.so.1.0.0
lrwxrwxrwx 1 root root 15 Aug 20 11:01 libqui.so.1.0 -> libqui.so.1.0.0
-rwxr-xr-x 1 root root 251542 Apr 3 09:11 libqui.so.1.0.0
hera> echo $QTDIR
/usr/lib/qt3
hera> uname -a
Linux hera 2.6.5-7.257-bigsmp #1 SMP Mon May 15 14:14:14 UTC 2006 i686 i686 i386 GNU/Linux
Hi Martin,
It looks like you have the Qt runtime installed (lib directory), but not the development files (include directory). These are often installed as separate packages in linux. In Redhat, for example, there are separate qt and qt-devel rpms. If you can't install the rpm, you can also build from source. The latest Qt 3.x linux source is available from Trolltech at:
ftp://ftp.trolltech.com/qt/source/qt-x11-free-3.3.8.tar.gz
Good luck!
Mike
Thanks! That worked.
Martin
Hi,
I have installed qt3 from the ftp site you have provided above. But I still get an error while configuring amos; here is the config results: KINDLY ADVICE
-- AMOS Assembler 2.0.8 Configuration Results --
C compiler: gcc -g -O2
C++ compiler: g++ -g -O2
GCC version: gcc (GCC) 4.2.3 (Ubuntu 4.2.3-2ubuntu7)
Host System type: i686-pc-linux-gnu
Install prefix: /home/aritakum/Desktop/amos-2.0.8
Install eprefix: ${prefix}
See config.h for further configuration information.
Email <amos-help@lists.sourceforge.net> with questions and bug reports.
WARNING! nucmer was not found but is required to run AMOScmp
install nucmer if planning on using AMOScmp
WARNING! delta-filter was not found but is required to run AMOScmp-shortReads-alignmentTrimmed
install delta-filter if planning on using AMOScmp-shortReads-alignmentTrimmed
WARNING! show-coords was not found but is required to run minimus2
install show-coords if planning on using minimus2
WARNING! Qt3 toolkit was not found but is required to run AMOS GUIs
install Qt3 or locate Qt3 with configure to build GUIs
see config.log for more information on what went wrong
WARNING! libz was not found but is required for certain read trace IO
install libz if planning on using compressed trace formats
Hi,
Try rerunning configure with the option --with-Qt-dir=/path/to/qt replacing /path/to/qt with the location where you installed qt.
Good luck,
Mike Schatz
Hi,
When I run the configure of amos-3.0.0,I get the information like this:
- AMOS Assembler 2.0.8 Configuration Results -
C compiler: gcc -g -O2
C++ compiler: g++ -g -O2
GCC version: gcc (GCC) 4.1.2 20080704 (Red Hat 4.1.2-46)
Host System type: x86_64-unknown-linux-gnu
Install prefix: /hpc/home/usm3/zhigangchen/amos3.0.0/amos-3.0.0
Install eprefix: ${prefix}
See config.h for further configuration information.
Email <amos-help@lists.sourceforge.net> with questions and bug reports.
WARNING! nucmer was not found but is required to run AMOScmp
install nucmer if planning on using AMOScmp
WARNING! delta-filter was not found but is required to run AMOScmp-shortReads-alignmentTrimmed
install delta-filter if planning on using AMOScmp-shortReads-alignmentTrimmed
WARNING! show-coords was not found but is required to run minimus2
install show-coords if planning on using minimus2
Where I can find nucmer 、delta-filter 、show-coords and install them in my computer .
Thanks in advance.
Chen