Read bank is /Users/kofoid/projects/inverted_duplications/Solexa/PacBio/10_8_2012/tt26834/test.bnk
Alignment error rate is 0.06
Minimum overlap bases is 5
Output will be written to the bank
Input is being read from the bank
** AMOS Exception **
WHAT: Cannot insert int key '1' multiple times
LINE: 209
FILE: IDMap_AMOS.cc
That error is thrown when two objects with the same "iid" are entered in a bank. I would check the inputs - i.e. the reads and the contig layout - to check if there are any naming collisions. You can dump the contents at the bank after that failure with 'bank-report'. Unsure why any objects would be assigned the same id.
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i cannot say the my fantastic outcome is because the 2 Day Diet Japan Lingzhi http://www.blurpalicious.com/udaydiets, mainly because i generally carrying out exercise and have fantastic diet regime , but i do feel differnce following taking the pill. and weight be lowered quicker than usual, and also it provides me much more energy. i genuinely like it.
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(This same question was posed by Christophe Klopp (2007-11-23 15:49) with no reply. )
When I run AMOScmp, everything proceeds well until the consensus step, at which point test.runAmos.log reads
!!! 2013-02-22 18:06:48 Doing step 50: Running consensus
!!! 2013-02-22 18:06:48 Running: /usr/local/bin/amos-3.1.0/bin/make-consensus -B -b /Users/kofoid/projects/inverted_duplications/Solexa/PacBio/10_8_2012/tt26834/test.bnk
Starting on Fri Feb 22 18:06:48 2013
Read bank is /Users/kofoid/projects/inverted_duplications/Solexa/PacBio/10_8_2012/tt26834/test.bnk
Alignment error rate is 0.06
Minimum overlap bases is 5
Output will be written to the bank
Input is being read from the bank
** AMOS Exception **
WHAT: Cannot insert int key '1' multiple times
LINE: 209
FILE: IDMap_AMOS.cc
!!! 2013-02-22 18:06:49 Command: /usr/local/bin/amos-3.1.0/bin/make-consensus -B -b /Users/kofoid/projects/inverted_duplications/Solexa/PacBio/10_8_2012/tt26834/test.bnk exited with status: 1
!!! END - Elapsed time: 0d 0h 7m 42s
I would appreciate any help getting past this problem.
Thanks,
Eric.
That error is thrown when two objects with the same "iid" are entered in a bank. I would check the inputs - i.e. the reads and the contig layout - to check if there are any naming collisions. You can dump the contents at the bank after that failure with 'bank-report'. Unsure why any objects would be assigned the same id.
i cannot say the my fantastic outcome is because the 2 Day Diet Japan Lingzhi http://www.blurpalicious.com/udaydiets, mainly because i generally carrying out exercise and have fantastic diet regime , but i do feel differnce following taking the pill. and weight be lowered quicker than usual, and also it provides me much more energy. i genuinely like it.