can you help me to trouble shoot the below error ?
$ goBambus2 -h
File "/opt/amos-3.1.0/bin/goBambus2", line 364
p = subprocess.Popen(AMOSDIR+"OutputResults -b %s -prefix %s %s"%(amosbank, prefix+".scaff.linear"), shell=True, stdin=subprocess.PIPE, stdout=vtext, stderr=logfile)
^
IndentationError: unindent does not match any outer indentation level
satish
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Hi All,
can you help me to trouble shoot the below error ?
$ goBambus2 -h
File "/opt/amos-3.1.0/bin/goBambus2", line 364
p = subprocess.Popen(AMOSDIR+"OutputResults -b %s -prefix %s %s"%(amosbank, prefix+".scaff.linear"), shell=True, stdin=subprocess.PIPE, stdout=vtext, stderr=logfile)
^
IndentationError: unindent does not match any outer indentation level
satish
I met this before. You just need indent it manually by adding an extra space in front of p. But, be aware there might be other issues after you fix this. Go to seqanswer to have a look:
http://seqanswers.com/forums/showthread.php?p=106367#post106367
Last edit: Yifang Tan 2013-06-02