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29 casm-layout ERROR v1.x.x open 2020-04-15 2020-04-26 5  
28 x86_64-pc-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I/apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS -I../.. -O2 -pipe -O2 -pipe -march=native -ftree-vectorize -Wno-cpp -c -o libAMOS_a-utility_AMOS.o `test -f 'utility_AMOS.cc' || echo '/apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/'`utility_AMOS.cc In file included from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.hh:13, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:10: /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh: In function 'std::__cxx11::string AMOS::Decode(AMOS::NCode_t)': /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh:78:25: warning: narrowing conversion of '(ncode & 127)' from 'AMOS::NCode_t' {aka 'unsigned int'} to 'char' inside { } [-Wnarrowing] char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX, ^ /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh:78:55: warning: narrowing conversion of '((ncode >> 8) & 127)' from 'AMOS::NCode_t' {aka 'unsigned int'} to 'char' inside { } [-Wnarrowing] char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX, ^ /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh:79:35: warning: narrowing conversion of '(((ncode >> 8) >> 8) & 127)' from 'AMOS::NCode_t' {aka 'unsigned int'} to 'char' inside { } [-Wnarrowing] ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'}; ^ In file included from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.hh:13, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/Message_AMOS.hh:14, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/Universal_AMOS.hh:13, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/Link_AMOS.hh:13, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/Edge_AMOS.hh:13, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/ContigEdge_AMOS.hh:13, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/universals_AMOS.hh:13, from /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/universals_AMOS.cc:10: /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh: In function 'std::__cxx11::string AMOS::Decode(AMOS::NCode_t)': /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh:78:25: warning: narrowing conversion of '(ncode & 127)' from 'AMOS::NCode_t' {aka 'unsigned int'} to 'char' inside { } [-Wnarrowing] char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX, ^ /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh:78:55: warning: narrowing conversion of '((ncode >> 8) & 127)' from 'AMOS::NCode_t' {aka 'unsigned int'} to 'char' inside { } [-Wnarrowing] char buff[4] = {ncode & CHAR_MAX, ncode >> CHAR_BIT & CHAR_MAX, ^ /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/inttypes_AMOS.hh:79:35: warning: narrowing conversion of '(((ncode >> 8) >> 8) & 127)' from 'AMOS::NCode_t' {aka 'unsigned int'} to 'char' inside { } [-Wnarrowing] ncode >> CHAR_BIT >> CHAR_BIT & CHAR_MAX, '\0'}; ^ /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc: At global scope: /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '128' from 'int' to 'char' inside { } [-Wnarrowing] }; ^ /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '129' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '130' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '131' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '132' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '133' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '134' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '135' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '136' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '137' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '138' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '139' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '140' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '141' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '142' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '143' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '144' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '145' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '146' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '147' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '148' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '149' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '150' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '151' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '152' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '153' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '154' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '155' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '156' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '157' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '158' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '159' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '160' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '161' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '162' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '163' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '164' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '165' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '166' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '167' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '168' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '169' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '170' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '171' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '172' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '173' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '174' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '175' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '176' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '177' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '178' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '179' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '180' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '181' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '182' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '183' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '184' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '185' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '186' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '187' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '188' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '189' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '190' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '191' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '192' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '193' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '194' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '195' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '196' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '197' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '198' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '199' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '200' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '201' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '202' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '203' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '204' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '205' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '206' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '207' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '208' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '209' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '210' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '211' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '212' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '213' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '214' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '215' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '216' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '217' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '218' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '219' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '220' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '221' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '222' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '223' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '224' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '225' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '226' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '227' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '228' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '229' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '230' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '231' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '232' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '233' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '234' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '235' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '236' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '237' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '238' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '239' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '240' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '241' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '242' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '243' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '244' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '245' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '246' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '247' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '248' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '249' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '250' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '251' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '252' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '253' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '254' from 'int' to 'char' inside { } [-Wnarrowing] /apps/gentoo/var/tmp/portage/sci-biology/amos-9999/work/amos-9999/src/AMOS/utility_AMOS.cc:35:3: error: narrowing conversion of '255' from 'int' to 'char' inside { } [-Wnarrowing] make[3]: *** [Makefile:1059: libAMOS_a-utility_AMOS.o] Error 1 v1.x.x open 2018-09-11 2020-10-06 5  
27 src/Align/genome-complexity-fast.cc:602:26: error: qualified-id in declaration before 'm' v1.x.x open 2018-09-11 2018-09-11 5  
26 Error in Message parsing code when final qlt field char is '.' v1.x.x open 2014-01-04 2015-01-31 5  
25 Compile failed v1.x.x open 2013-08-06 2015-03-20 5  
24 Qt and toAmos_new None open 2013-05-03 2014-08-20 5  
23 make-consensus: Assert failure in Overlap_Align None open 2012-08-03 2014-08-18 5  
22 typo: agressive None open 2012-05-02 2012-05-02 5  
21 Minimus2 Failure on Large Contigs with Ns None open 2011-08-25 2011-08-25 5  
20 minimus2-blat with hardcoded path to blat None open 2011-08-02 2014-08-15 5  
19 Quality file name search is incorrect (tarchive2amos) None open 2011-05-10 2011-05-10 5  
18 minimus2 dumpreads command (revised) None open 2011-03-09 2011-03-09 5  
17 minimus2 dumpreads command None open 2011-03-09 2011-03-09 5  
16 bamboo compilation errors & fixes None open 2010-08-10 2010-08-10 9  
15 kmerdist build None open 2010-08-06 2010-08-10 9  
14 problems in .bnk file made with toAmos -utg None open 2010-03-31 2010-04-01 5  
10 toAmos failing to handle alphanumeric IIDs None open 2009-05-20 2009-05-20 5  
9 bank2scaff gapsize off by 1 None open 2008-01-04 2008-01-04 5  
7 ca2ace None open Mihai Pop 2005-07-19 2005-07-19 5  
6 runAmos variable substitution None open Mihai Pop 2005-07-19 2005-07-19 5  
5 clean options in runAmos None open Mihai Pop 2005-07-19 2005-07-19 5  
4 runAmos fixes None open Mihai Pop 2005-07-19 2005-07-19 5  
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