Deer all,
7 modules were added and twho changes occured.
Enjoy AMEN!
7 modules:
- Module to estimate if a biological entity (protein for exemple) interacts or regulates more genes/proteins in a cluster of genes as compared to whole genes (Enrichment on regulatory or interaction networks). Written by Aurélie Lardenois.
- Module to visualize these enrichments as a network. Written by Aurélie Lardenois.
- Two modules for semi-supervised k-means and PAM methods.
- Module to add gene set files (.gmt files from GSEA) into the annotation file.
- Module to normalize with positive or negative control genes.
- Module to reorganize the samples into an expression file
Two changes:
- When importing group files they are now sorted in the alphabetical order and then imported into AMEN
- The R packages installation module was modified.