Nina Jeliazkova
-
2014-11-21
- assigned_to: Nikolay Kochev
We are using ambit2-smarts v2.5.7
The web version yields a product:
http://apps.ideaconsult.net:8080/ambit2/depict/reaction?search=C%23C&smirks=[H%3A3][C%3A1]%23[C%3A2]%3E%3E[H%3A3][%236%3A1]%28-[%236%3A2]%29%3DO
This code however, returns "null"
SMIRKSManager smrkMan = new SMIRKSManager(DefaultChemObjectBuilder.getInstance());
SMIRKSReaction reaction = smrkMan.parse("[H:3][C:1]#[C:2]>>[H:3]#6:1=O");
IAtomContainer substrate = FormatConverter.fromSmiles("C#C");
System.out.println(smrkMan.applyTransformationWithSingleCopyForEachPos(substrate, null, reaction));
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