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#78 SMIRKS reaction does not match

ambit2-smirks
open
SMIRKS (2)
5
2016-03-29
2014-11-21
No

We are using ambit2-smarts v2.5.7

The web version yields a product:

http://apps.ideaconsult.net:8080/ambit2/depict/reaction?search=C%23C&smirks=[H%3A3][C%3A1]%23[C%3A2]%3E%3E[H%3A3][%236%3A1]%28-[%236%3A2]%29%3DO

This code however, returns "null"

SMIRKSManager smrkMan = new SMIRKSManager(DefaultChemObjectBuilder.getInstance());
SMIRKSReaction reaction = smrkMan.parse("[H:3][C:1]#[C:2]>>[H:3]#6:1=O");
IAtomContainer substrate = FormatConverter.fromSmiles("C#C");
System.out.println(smrkMan.applyTransformationWithSingleCopyForEachPos(substrate, null, reaction));
~~~~~~

Discussion

  • Nina Jeliazkova

    Nina Jeliazkova - 2014-11-21
    • assigned_to: Nikolay Kochev
     
  • Nina Jeliazkova

    Nina Jeliazkova - 2015-11-23
    • Group: ambit2-3.0.0 --> ambit-3.0.1
     
  • Nina Jeliazkova

    Nina Jeliazkova - 2016-03-29
    • Group: ambit-3.0.2 --> ambit2-smirks
     

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