proteomics modified by Anonymous

Anonymous — Sat, 01 Feb 2014 01:06:11 -0000

Proteomics Analysis in AltAnalyze

Proteomics experiments typically produce quantitative values associated with protein, peptide or gene identifiers. AltAnalyze supports import and analysis of proteomics data assuming:

IDs correspond to any of the many supported input ID systems
Quantitative values are non-zero (ideally log2)

Input IDs do not have to correspond to one of the above, but will if annotations and enrichment analyses are desired in AltAnalyze. Supported analyses include:

Differential protein expression statistics (e.g., moderated t-test)
Protein/gene annotation (e.g., name, Pathways, Ontologies)
Sample classification (LineageProfiler)
Marker prediction (MarkerFinder)
Quantile and batch-effects normalization
Hierarchical clustering
2D and 3D PCA
Basic sample QC visualization
Pathway enrichment analysis and visualization

Data Import

To import data, simple select the Vendor/data-type as Other ID and the appropriate ID system under the menu Select platform. Proceed with the default or customized options.

Recent changes to proteomics

proteomics modified by Anonymous

Proteomics Analysis in AltAnalyze

Data Import