https://sourceforge.net/p/altanalyze/wiki/AlternativeOutput/Recent changes to AlternativeOutputenSat, 01 Feb 2014 01:06:48 -0000https://sourceforge.net/p/altanalyze/wiki/AlternativeOutput/<div class="markdown_content"><p>The <a class="" href="/p/altanalyze/wiki/AlternativeOutput/">AlternativeOutput</a> directory contains results from an alternative exon analysis. These files are typically the most informative results from an <a class="" href="/p/altanalyze/wiki/AltAnalyze/">AltAnalyze</a> analysis. These include: </p> <ul> <li>(exon-inclusion-results) Alternative exon scores, annotations and protein/motif predictions for significant probesets </li> <li>(exon-inclusion-GENE-results) Summarized exon scores, annotations and protein/motif predictions reported for each unique gene only </li> <li>(ft-domain-zscores) Over-representation results for each impacted protein domain/motif </li> <li>(microRNA-zscores) Over-representation results for each impacted protein microRNA binding site </li> <li>(comparison-evidence) Combines junction and exon-level analyses to highlight unique exons regulated by different analyses and where independent confirmation of alternative exon expression exists. </li> <li>(summary-results) Overview summary statistics for each analysis </li> <li>(all-genes-comparisons-events) Combined exon results for multiple analyses in a single file </li> <li>(all-genes-GENE-comparisons-events) Combined gene results for multiple analyses in a single file </li> </ul></div>AnonymousSat, 01 Feb 2014 01:06:48 -0000https://sourceforge.netc1f6ecb23072244fb8cbd03b8386fa0154aa6a03