Recent changes to Home

Home modified by Kaushalya

Kaushalya — Thu, 03 Oct 2013 00:42:26 -0000

Home modified by Kaushalya

Kaushalya — Thu, 03 Oct 2013 00:42:06 -0000

--- v6
+++ v7
@@ -18,7 +18,7 @@
 Requirements
 ------------

-1. R statistical language
+1. R statistical language (R 2.15)
 
 * wmtsa R package

Home modified by Kaushalya

Kaushalya — Tue, 17 Sep 2013 06:02:04 -0000

--- v5
+++ v6
@@ -1,13 +1,13 @@
 ADTEx: A berration Detection in Tumour Exome
 =============================================

-1. [Introduction]
+1. Introduction
 * Requirements

 Introduction
 ------------

-ADTEx is a freely available software package coded using R statistical software and Python to detect somatic copy number variations (CNVs) and genotypes in tumour whole exome samples. ADTEx is suitable for paired tumour/matched normal samples. The overall algorithm consists of few steps including,
+ADTEx is a freely available software package coded using R statistical language and Python to detect somatic copy number variations (CNVs) and genotypes in tumour whole exome samples. ADTEx is suitable for paired tumour/matched normal samples. The overall algorithm consists of few steps including,

 1. Calculate depth of coverage (DOC) ratios and B allele frequencies (BAFs)
 * Noise reduction in ratios

Home modified by Kaushalya

Kaushalya — Mon, 16 Sep 2013 08:09:32 -0000

--- v4
+++ v5
@@ -20,6 +20,10 @@

 1. R statistical language
 
+* wmtsa R package
+
+* DNAcopy R package
+
 * Python 2.7+
 
 * BEDTools

Home modified by Kaushalya

Kaushalya — Mon, 16 Sep 2013 08:07:41 -0000

--- v3
+++ v4
@@ -2,6 +2,7 @@
 =============================================

 1. [Introduction]
+* Requirements

 Introduction
 ------------
@@ -14,3 +15,12 @@
 * Select heterozygous SNP loci in normal sample
 * Apply second HMM to predict genotypes

+Requirements
+------------
+
+1. R statistical language
+
+* Python 2.7+
+
+* BEDTools
+

Home modified by Kaushalya

Kaushalya — Mon, 16 Sep 2013 07:50:19 -0000

--- v2
+++ v3
@@ -6,3 +6,11 @@
 Introduction
 ------------

+ADTEx is a freely available software package coded using R statistical software and Python to detect somatic copy number variations (CNVs) and genotypes in tumour whole exome samples. ADTEx is suitable for paired tumour/matched normal samples. The overall algorithm consists of few steps including,
+
+1. Calculate depth of coverage (DOC) ratios and B allele frequencies (BAFs)
+* Noise reduction in ratios
+* Apply first HMM to predict CNVs
+* Select heterozygous SNP loci in normal sample
+* Apply second HMM to predict genotypes
+

Home modified by Kaushalya

Kaushalya — Mon, 16 Sep 2013 07:39:25 -0000

--- v1
+++ v2
@@ -1,8 +1,8 @@
-Welcome to your wiki!
+ADTEx: A berration Detection in Tumour Exome
+=============================================

-This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].
+1. [Introduction]

-The wiki uses [Markdown](/p/adtex/wiki/markdown_syntax/) syntax.
+Introduction
+------------

-[[members limit=20]]
-[[download_button]]

Discussion for Home page

Kaushalya — Mon, 16 Sep 2013 07:15:29 -0000

ADTEx: Aberration Detection in Tumour Exome

Home modified by Kaushalya

Kaushalya — Tue, 27 Aug 2013 01:08:52 -0000

Welcome to your wiki!

This is the default page, edit it as you see fit. To add a new page simply reference it within brackets, e.g.: [SamplePage].

The wiki uses Markdown syntax.

Project Members:

Kaushalya (admin)