adegenet Activity
an R package for the exploratory analysis of genetic and genomic data
Brought to you by:
jombart
Activity for adegenet
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Anonymous created ticket #11
Population genetics
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Thibaut Jombart modified ticket #5
allele names in feat sel (dapc server)
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moved request to github
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bug in xval DAPC server - max nb PCs
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moved requested to github
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make print optional for 'summary' of objects
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request moved to github
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FDIST2: adaptive divergence based on Fst
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moving request to github
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is.genind() prints duplicate sample names
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moved to github.
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Output of allele freq, changes in allele freq
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moving to issue on github
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Anonymous created ticket #10
Output of allele freq, changes in allele freq
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Anonymous created ticket #9
is.genind() prints duplicate sample names
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Anonymous created ticket #8
FDIST2: adaptive divergence based on Fst
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make print optional for 'summary' of objects
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Zhian Kamvar committed [864980]
import optimize
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update change log.
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Add Zhian to developers
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Add estimate res.type to inbreeding function.
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modified inbreeding documentation.
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Caitlin Collins committed [8d3337]
updated tutorial pdf to match Rnw.
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modified command in tutorial to open adegenetSe...
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added my name, e-mail to the dapc tutorial
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Merge branch 'master' of ssh://git.code.sf.net/...
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updated snpzip to print loadingplots for all DA...
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updated snpzip to display loadingplots for all ...
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added pairDist functions
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fixed a few typos, pkg is ok
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typo messed up argument passing.
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starting new version
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fixed a bug in gengraph pointed out by Yee Loon...
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Preparing the new release. Some pb in server re...
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version submitted to CRAN 1.4-2
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bug in xval DAPC server - max nb PCs
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allele names in feat sel (dapc server)
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fixed bug
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test
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trying to solve the conflict
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cleaned the genomics tuto
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recompiled genomics tuto; fixed errors
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added glSim but R code not grey and Sweaveopts ...
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Merged with Caitlin, resolved conflict
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adding missing figure; replacing empty ascore
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Added the missing files; some minor changes to ...
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added all the pdf of the tutorials; recompiled ...
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fixed typo in ChangeLog, fixed error in glSim d...
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added xval to tutorial
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changed help advice from vignette to tutorial
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fixed typo in output of genind objects
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adding gitignore files
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new version of the sPCA tutorial
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Merge branch 'master' of ssh://git.code.sf.net/...
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fixed ploidy issue in glSim
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new tuto genomics
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new dapc vignette
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switched to new version; added website URL to D...
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Fixed bug in adegenetTutorial
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New version
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renamed tutorial files
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renamed dir
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moved figures to figs/
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updated basics tutorial
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released candidate
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removed stupid file
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adding the sources, ready for release
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Updated ChangeLog, package doc, NAMESPACE - rea...
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Adding links to the sever doc
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made loading plot, help, and glossary tabs.
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Merge branch 'master' of ssh://git.code.sf.net/...
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removing useless files
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removed the useless file
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Started to update the tutorial.
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Restored and updated the function adegenetTutor...
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restoring server files
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made changes to xval pc selection then deleted ...
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enabled communication between xval and npca slider
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translating the vignettes
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Merge branch 'master' of ssh://git.code.sf.net/...
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made xval responsive to n.da
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improved xval ui etc.
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New tick box for xval, ticked by default if we ...
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Converting vignettes to knitr - not tested
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not sure what that is...
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tidied up server stuff; xval still hanging
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removing . from input labels
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debugged dapc - now number of DA is taken into ...
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cleaning commented code and annotations / xval ...
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Just new compile of vignette
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restoring some consistency in indentation and n...
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xval working
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fixed trivial error in server call
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Added doc for servers; added new function adege...
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More complete interface for the dapc server
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added dynamic UI for npca and nda
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changed version number 1.4.0 to 1.4-0
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fixed the library(ade4) warning
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Merge branch 'master' of ssh://git.code.sf.net/...
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added name to author list
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