qSnp

qsnp is a stand-alone java app that performs heuristic (rules-based) calling of somatic and germline single nucleotide variants (SNV) from next-generation sequencing data.

If you are using qsnp, please cite this publication:

Kassahn KS, Holmes O, Nones K, Patch A-M, Miller DK, et al. (2013) Somatic Point Mutation Calling in Low Cellularity Tumors. PLoS ONE 8(11): e74380. doi:10.1371/journal.pone.0074380

Release Date	Version
2014-05-20	1.0 - First released version. Under internal development for 3 years at time of migration to SourceForge.
2015-10-01	2.0 - In beta testing. This version will be released soon. For early adopters, it is available on a collaborative basis - contact john.pearson@qimrberghofer.edu.au