#2 Error runing ABACAS

[Cecili Mendes]

I have contigs from mitochondria and chloroplast of a Cactacea species generated by NovoPlasty tool.

The program start to run, but when is finishing I get the error below

postnuc: postnuc.cc:1427: long int revC(long int, long int): Assertion `Len - Coord + 1 > 0' failed.
Aborted (core dumped)
ERROR: postnuc returned non-zero
Use of uninitialized value in addition (+) at /usr/bin/abacas line 1001.
Total contigs = 0
Use of uninitialized value $id in print at /usr/bin/abacas line 1013.
Use of uninitialized value $id in print at /usr/bin/abacas line 1014.
Use of uninitialized value $id in print at /usr/bin/abacas line 1015.

Can anyone help me with some solution to this error?

Below is the command line used to run Abacas

abacas -r /home/alunos/Documents/reference.fasta -q /home/alunos/Documents/Contigs_mito.fasta -p nucmer -b -o /home/alunos/Documents/pseudomolecule

I already tryed to find some solution online, but I could not find anything similar to this.

Thank you in advance