Search Results for "pbs-drmaa"

The Community Scheduler Framework (CSF) is a set of Grid Services, implemented using the Globus Toolkit, which provides an environment for the development of metaschedulers that can dispatch jobs to resource managers such as LSF, SGE, PBS and Condor.

Package Build Service (pbs) - Tools for building packages in clean chroot environment: aum++: Tool for building packages in clean chroot environment mass_rebuild: Tool for automatic rebuilding package(s) repo-hdlistgen: Tool for work with own repo genchroot-tarball: Tool for generation chroot archive mass_rebuild_test: Tool for testing installation packages after mass_rebuild pbs: Service for building packages in clean chroot environment (temporary died now...

Through our tool a user can perform the whole analysis parallelized on UNIX HPC systems controlled by SGE or PBS automatically. Non-bioinformatics researchers can easily and quickly identify variants that are potentially causing diseases while minimizing false positives and artifacts.

The q utility is a platform for creating and managing data analysis pipelines. It expands the value of your existing job scheduler - either Grid Engine or TORQUE PBS - through numerous functions that help you organize, submit, monitor, manage and share your informatics work. Data processing pipelines require high-level organization and parallelization of work to optimize resource utilization and decrease the time to results. q (from queue) allows complex job sequences to be efficiently...

Opal is a toolkit for wrapping scientific applications as Web services on Cluster, Grid and Cloud resources with ease. Users may access these software as a service using simple Web service APIs from their custom application and workflow environment.

Job Monarch is an addon to the Ganglia Monitoring System that provides batch job monitoring and archiving plus a graphical overview of clusters and assorted batch systems. Fully supported batch system: Torque, PBS and SLURM. Experimental: LSF, SGE

PBS Cluster Viz is a project to display information useful to admins and users about a computing cluster managed by a PBS-compatible resource manager. Information includes load and job distribution. Interactive as well as static output is available.

Mpaxs provides a simple abstraction for executing Callables and Runnables either locally within the same Virtual Machine, on the same host via RMI, or on remote machines, also via RMI. It supports launching of new compute hosts via an extensible API, currently featuring local compute host launching and grid compute host launching using the DRMAA API.

A simple lightweight system for genomic annotation written in Java. SHAP uses the Spring application framework, Hibernate for persistence and full-text searching of results and DRMAA for Grid computing.

RNA CoMPASS, a web-based GUI distributed computational pipeline, provides all-in-one functionality including human transcriptome quantification and the typical endogenous RNA-Sequencing analysis along with the investigation of exogenous sequences. RNA CoMPASS is deployable on either a local cluster or a grid environment managed by PBS submission.

... are submitted to the cluster depending on attributes set up in the configuration file. Program options can be modified in the main script "DressUp", and PBS options can be modified from the HeaderFiles directory.

DCI Bridge is a web application (sevice) that provides standard access to the distributed computing infrastructures (DCIs) like grids, desktop grids, clusters, clouds and service based computational resources by implementing the specification of the OGSA Basic Execution Service 1.0. The DCI Bridge web application creates a transparent layer between the users (workflow systems) and the DCI systems. The user can submit jobs to the various DCI systems using the OGSA Basic Execution Service...

A set of Java-tools to get Taverna to "play-nice" with a cluster that runs PBS. Please see the homepage link for more details.

PBS Job Seer is a program which analyses the state of a PBS/Maui batch system and automatically generates a batch script for MPI jobs which would then be able to start immediately.

Rapid development of portal-based user interfaces for submitting compute jobs to remote compute resources. It supports the mainstream compute engine vendors Sun Grid Engine, PBS and Condor. Get a job-submission portal up and running in a few hours.

Cross platform GUI managing bookmarks and shortcuts in a portable way. Support import/export, search, encryption, hierarchical tags, USB key installation, various environments integration, OS-dependent shortcuts, plugins extensibility.

A web-based monitor for PBS-based clusters (e.g. OpenPBS and Torque). It provides an overview of node usage, running jobs, and active users. It is built on the pbs-python libraries.

FedStage DRMAA for Torque library is an implementation of Open Grid Forum's DRMAA 1.0 (Distributed Resource Management Application API) specification for the submission and control of jobs to Torque.

The project offers extensions for source code available in the Condor system (www.cs.wisc.edu/condor). The modifications are backported to the Condor distribution. Amongst others, we are offering an improved implementation of the Condor DRMAA C library.

Job Accounting and User and Project managment for Clustered Computing using Perl, Apache, and MySQL. Designed to be extensible, it processes logs from currently PBS, OpenPBS and Maui2. It also contains a web frontend for User and Project Managment

This is a collection of Perl scripts that parses the accounting directory of Torque PBS and prints out some useful statistics.

The Java Batch System (JBS) is a batch queueing system in the tradition of NQS and PBS for internal (Java-based) and system batch jobs. Stand-alone operation and integration with existing batch queueing systems, initially OpenPBS, is supported.

SSS/XML implements the SSSRMAP protocol developed by SCIDAC. It includes an API and servers that use the SSSRMAP protocol to communicate with the QBank allocation manager and the Portable Batch System (PBS).

I developed this for PBS as a quick way to display local station events. This app uses the iCal standard, but in an XML format (xCal) with a MySQL and perl backend. You can import xCal events from an .xsc file to MySQL. Uses XML/XSL/XSLT.

The Maui Scheduler is a tool to to extend the capabilities of existing resource manager systems such as PBS, SGE, Loadleveler, and so forth. It provides powerful tools for managing and optimizing clusters systems and features to enable effective use of t