Search Results for "bowtie2-2.5.2"

Tria Operating System detects hard & soft specs of the PC where you run the program, offering the ability to load this info or specify it manually to let the program inform you what would be the best operating system for a specific PC, with the specified hardware, and then see the difference by adding RAM, a SSD hard drive, changing the graphics card ... etc. REQUIREMENTS: For Linux, you need GAMBAS 3.3 or later, so you will have to install the gambas3 package before installing. 90's...

Middleware that adds headers X-Service-Name & X-Service-Version to the response of Koa. Inspired by koa-version-header.

.... The pipeline also requires installed versions of the mapping tool Bowtie2 and samtools.

A package based on 3 local alignment tools i.e., Bowtie, Bowtie2 and BWA. Package covers single-end, paired-end alignments. Moreover, the package also demonstrates overlap alignment and colorspace alignment features. The package also includes graphical user interface to make it interactive.

..., variant calling, variant annotation and co-analyze Sanger and NGS data under a single platform. It is capable of analyzing reads from multiple patients in a single run to create a list of potential disease causing base substitutions as well as deletions and insertions. MutAid has been developed for expert and non-expert users and supports four sequencing platforms (Sanger, Illumina, 454 and Ion Torrent) and five read mappers including BWA,TMAP, Bowtie,Bowtie2 and GSNAP and four variant callers

... aligned to the reference genome using the Bowtie2, allowing a maximum of four mismatches and one gap of up to 3 bp. Using the SAMtools pileup command the variable positions (SNPs) were determined. 5.AFSM_meth_V_1.0.pl are used for analyses of AFSM methylation results were based on comparisons of assembled sequences . perl AFSM_meth_V_1.0.pl -i output.sort.bam -o output.meth.matrix

Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the development...

... Santos) + 2.5.2 - Layout fix on report window (Tiago_Farias) - Auto PIN and double click on PIN button FIX (Fabiano_Ferreira) + 2.5 - Added Configuration Possibility - Added button to Configuration on Main Screen - Added Information Button on Main Screen - Improved time algorithm - Utilization of a Config.ini file to save personalizated settings. + 2.4.1 - Removed minimize button from main window - Fixed sound on last 20 seconds when using Windo

Nexuiz is a multiplayer first-person shooter. It is distributed under the GNU General Public License (GPLv2). Version 1.0 was released on May 31, 2005. The current version is, 2.5.2.