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NOC is a open source development toolkit and a powerful molecular explorer for protein structure visualizing,analysis,crystallographic mapping, modeling, and refinement, Gromacs/Amber MD trajectories displaying,movie making...
A user-friendly open-source toolkit written in Java that lets you visualize and analyze the behaviour of users in the ActiveWorlds family of 3D virtual worlds by mapping them over 2D space.
This project simulates a multi-agent system (swarm) behavior both graphically and not. The purpose of this project is to research the properties suggested in "stability analysis of swarms" V.Gazi & K.M.Passino. Using the vpython library for 3D modeling
SOMMS is an analysis program for mass spectra intended for bio-informatics research. Its goal is to relate theoretical spectra with raw data. A previous version, accompanying an article published in Rapid Comm. in Mass Spectrometry, was written in Perl.
geolocate is a front-end java program that works with google maps to provide dynamic maps to users. Combined with the flexibility of XML and the power of javascript, users can see various relationships on their map to draw conclusions.
Open2Dprot is an open-source proteomics project for the development of bioinformatic tools for n-dimensional protein expression dataanalysis of quantified protein expression across multiple samples from research experiments.
Special Population Planner: A GIS-based emergency planning tool for all-hazards analysis. It is tailored for planning for the needs of persons with special needs, but can be easily adapted to other uses. It runs within ESRI ArcGIS 9.1 to 9.3.0.
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K-automaton is a new parsing (syntactic analysis) machine isomorphous to language. Implemented in Java. Can generate Java code from grammars described in EBNF.
FlexCRFs: A Flexible Conditional Random Fields Toolkit for Labeling and Segmenting Sequence Data (this includes a parallel implementation of CRFs called PCRFs to support training CRF models on massively parallel computer systems).
HyPhy is a comprehensive environment for maximum likelihood statistical analysis of genetic sequence data. It includes a large collection of out of the box analyses, a feature-rich graphical user interface for custom dataanalysis and a scripting languag
A collection of novel phylogenetics algorithms that assists biologists, geneticists, and bioinformaticians in the analysis and interpretation of phylogenetic data.
A code for fast multi-dimensional density estimation . Instead of assuming an a-priori metric definition, it calculates a locally adaptive metric for each data point by using, a Shannon Entropy based, binary space partitioning scheme.
GEDAS is a software to perform microarray dataanalysis with friendly user interface and convenient data display. Currently some commonly used data clustering algorithms have been implemented in this software.
W.H.A.T. is an analytic tool for Wikipedia with two main functionalities: an article network and extensive statistics. It contains a visualization of the article networks and a powerful interface to analyze the behavior of authors.
SoniPy- a heterogeneous software environment for data sonification research & auditory displays. SoniPy wraps modules for data acquisition, storage & analysis, cognitive & perceptual mappings and sound rendering, by encapsulating them with Python.
Command line encryption tool for one time, daemon, or stream data processing. Data stats, check sums, conversion to/from text. Data/keys from files, pipes, standard input. In-place/diverted processing or data-analysis-only. Random, file, password keys.
HidroSIG is a GIS that supports raster and vectorial maps with modules oriented to the hydrological analysis, time series, remote sensing and more. It has been made 100% in java using VisAD for data visualization and using MySQL to storage all data.
GEOSS (Gene Expression Open Source System), formerly known as GeneX Va, provides a web-based interface for the storage and analysis of Affymetrix GeneChipŽ and other microarray data. It has been developed by engineers at the GeneChip/Microarray Bioinform
Watchdog is a Java performance monitoring and tuning framework. It is suitable for production environments allowing flexible auditing of performance data for later analysis by a comprehensive set of tools.
This is a simple C library for working with the raw data in uncompressed WAV files. There are many better libraries for dealing with WAV files than this one. I wrote this to do some experimenting, and it's probably not the solution you're looking for.