Search Results for "data analysis" - Page 60
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Showing 2696 open source projects for "data analysis"
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The Java Data Mining Package (JDMP) is a library that provides methods for analyzing data with the help of machine learning algorithms (e.g. clustering, classification, graphical models, neural networks, Bayesian networks, text processing, optimization).
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Pheno Analysis is a sequential data assimilation framework for use with prognostic phenology models. It uses MODIS satellite data to constrain model parameters and states.
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cimgexplorer
Exploration and analysis program for (scientific) images
CImgExplorer is an exploration and analysis program for (scientific) intensity images. It shows floating-point and integer intensity images in a false-colour display and allows range adjustment, zooming, histogram optimisation, and simple evaluation. Reads most formats using GDAL. -
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The Dataverse Network is a Java EE5 app that enables researchers to share data on-line. It provides data citation standards, facilitates preservation, distribution and replication of data, and includes statistical analysis. More at: http://thedata.org
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Fully Managed MySQL, PostgreSQL, and SQL ServerCloud SQL handles your database ops end to end, so you can focus on your app.
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The NEDSS Base System (NBS) is a web-based integrated public health disease surveillance system sponsored by the Center for Disease Control and Prevention(CDC). It was developed to provide a NEDSS-standards based system for the secure, accurate, and efficient collection, transmission, and analysis of public health data. It also provides a platform upon which program-specific modules can be built to meet state and program area requirements. State health departments use the NBS for the surveillance and analysis of notifiable diseases. It supports manual data entry from for a Lab or Medical Provider, Electronic Lab Report (ELR) based data entry, management of Lab and Morbidity data to create investigation, and submission of notifications to CDC.
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A Tool for Retrieval, Visualization and Analysis of biological Pathways. Import a Gene or Protein Set from any Excel file. Automatically find signaling Pathways from KEGG. Integrate your Data in Seconds with a live interactive Force-directed Layout.
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optPBN
An optimization toolbox for probabilistic Boolean networks
We introduce optPBN, a Matlab-based toolbox for the optimization of probabilistic Boolean networks (PBN) which operates under the framework of the BN/PBN toolbox from Shmulevich et al. optPBN offers an easy generation of probabilistic Boolean networks from Boolean rule-based modeling and allows for flexible measurement data integration from multiple experiments and a subsequent integrated optimization problem generation which then can be solved with different optimizers. Thereby optPBN... -
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Golden Cheetah
Cycling Performance Software for Linux, Mac OS X, and Windows
GoldenCheetah is a software package that: Downloads ride data directly from the CycleOps PowerTap and the SRM PowerControl V, VI and VII. Imports ride data downloaded with other programs, including TrainingPeaks WKO+ and the manufacturers' software for the Ergomo, Garmin, Polar, PowerTap, and SRM devices. Provides a rich set of analysis tools, including a critical power graph, BikeScore calculation, histogram analysis, a best interval finder, and a pedal force versus pedal velocity chart, to name just a few. ... -
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Matlab software for analysis of skin conductance data (SC; viz., electrodermal activity, EDA; galvanic skin response, GSR). Data decomposition and scientific analysis based on deconvolution approach. Various functions via GUI or batch-mode.
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dpcReport
Standalone GUI for dPCR experiments
Standalone GUI for dPCR experiments. This application launches a graphical user interface that generates reports from digital PCR data. -
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QuantitativeT2
Glioblastoma in mouse brain analyzed by QuantitativeT2
...It is written in XCode. The MRI data was acquired using Bruker 9.4T, 128 T2 echoes were collected for 128x128 image matrix. -
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PaPCo is modular IDL software for the analysis, distribution and display of science data products. Primarily used by the space science community but in principle suited for any time ordered data products.
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Reconcile: Web Credibility Evaluation
Robust online credibility evaluation of web content
The goal of the project is the creation of new mechanisms for supporting users in the evaluation of Web content credibility and improvement of the quality of Web content credibility evaluation. Our society increasingly relies on the vast amount of information available on the Internet. As a consequence, the issue of judging or evaluating the credibility of this information becomes of crucial importance. Thus, algorithms and mechanisms for the assessment of credibility of Web content can... -
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Whitaker's Words Latin Dictionary
Latin dictionary and grammar aid: Latin to English, English to Latin.
...A few hundred prefixes and suffixes further enlarge the range. These will generate tens of thousands of additional words. An English-to-Latin feature uses the same data to provide the Latin equivalent of an English word. -
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circlize
Circular visualization in R
circlize is an R package for creating circular visualizations (plots laid out in circular coordinate systems) in a very flexible way. It implements many types of plots using circular layouts: chord diagrams, circular heatmaps, arcs/links between sectors, genomic data visualization, etc. It provides low-level drawing functions as well as high-level functions to build complex visualizations. It’s often used in genomics, network analysis, or other fields where relationships among categories or entities can be nicely displayed in a circular fashion. Support for circular heatmaps, multiple tracks (rings), for showing multiple layers of data per sector. ... -
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aslm
aslm - a slightly modified asl-module
aslm is an object orientated toolbox written in MATLAB. It was developed for common tasks associated with the analysis of arterial spin labeling (ASL) and other MRI data. Portions of the code rely heavily on (or are copied from) SPM (http://www.fil.ion.ucl.ac.uk/spm), marsbar (http://marsbar.sourceforge.net, Matthew Brett et al.), and GIFT (Group ICA of fMRI Toolbox v.1.3, http://mialab.mrn.org/software/gift/ )which are also released under the GNU public licence. -
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MetTailor
MetTailor: Dynamic Block Summary and Data Normalization for Robust Ana
Mass spectrometry-based quantitative metabolomics (LC-MS or GC-MS) requires accurate peak alignment and adaptive normalization, both of which have known limitations in the current data extraction software packages. MetTailor is a software package that performs post-extraction processing steps such as cross-sample realignment and data normalization that are specifically designed to account for the experimental factors from chromatographic separation and MS analysis. The two major components are: (1) A dynamic block summarization method for peak intensity data to correct mis-aligned peak features across the samples, significantly alleviating the missing data problem... -
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FMFilter
Fast Model Based Variant Filtering Tool
Filtering out the prominent portion through the excessive amount of information produced by next generation techniques is a challenging task. Current tools enable to analyze next generation sequencing data in various methods. However, there is still need for fast, easy to use and efficacious tools. We provide an efficient filtering tool for next generation sequencing data produced by genetic disease studies. FMFilter allows to choose one of the inheritance models (recessive, dominant,... -
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MathOCR
A scientific document recognition system
MathOCR is a printed scientific document recognition system. MathOCR is still in the pre-alpha stage, recognition result may not be good enough for practical purposes. MathOCR is a printed scientific document recognition system written in pure Java. MathOCR has the functionality of image preprocessing, layout analysis and character recognition, especially the ability to recognize mathematical expression. MathOCR can work do not depends on other OCR software. -
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GenoSuite is a framework developed for proteogenomic analysis. An updated GenoSuite2 is just released where FDRScore (Jones et al. Proteomics 2009) based strategy is used to integrate results from multiple search algorithms. Prokaryotic Proteogenomic Tool(PPT) is developed as a part of GenoSuite framework. PPT is for finding novel translations in prokaryotic genomes and is dependent on Mass Spectrometry based proteomics data and related genome sequence.
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Universal Java Matrix Package
sparse and dense matrix, linear algebra, visualization, big data
The Universal Java Matrix Package (UJMP) is an open source Java library which provides sparse and dense matrix classes, as well as a large number of calculations for linear algebra such as matrix multiplication or matrix inverse. Operations such as mean, correlation, standard deviation, replacement of missing values or the calculation of mutual information are supported, too. The Universal Java Matrix Package provides various visualization methods, import and export filters for a large... -
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IBEX_MDA
An open infrastructure software to facilitate radiomics research.
...The latest stand-alone version can be downloaded at http://bit.ly/IBEX_MDAnderson The latest source-code version can be downloaded at http://bit.ly/IBEXSrc_MDAnderson IBEX (imaging biomarker explorer) is an open infrastructure software platform that flexibly supports common radiomics workflow tasks such as multimodality image data import and review, development of feature extraction algorithms, model validation, and consistent data sharing among multiple institutions. IBEX software package was developed using the MATLAB and C/C++ programming languages. The software architecture deploys the modern model-view-controller, unit testing, and function handle programming concepts to isolate each quantitative imaging analysis task, to validate if their relevant data and algorithms are fit for use, and to plug in new modules. -
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Savsoft Quiz v2.0
Savsoft Quiz is an Open Source Quiz Management Web Application
Savsoft Quiz v2.0 is a php based open source web application to create and manage online quiz, test, exam on your website. To read terms and condition please visit: http://savsoftquiz.com/ -
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CoGA
R package for differential co-expression analysis
CoGA (Co-expression Graph Analyzer) is an R package to identify differentially co-expressed gene sets between two phenotypes. The software infers gene regulatory networks from gene expression data, and compares structural properties of the inferred networks based on their spectrum distributions. It also compares the networks in terms of their gene centralities, clustering coefficients and shortest path lengths. In addition to the differential co-expression analyses, the tool provides graphical interfaces for network visualization, ranking of genes according to their "importance" in the network, and the standard single gene differential expression analysis. -
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EXMARaLDA stands for "Extensible Markup Language for Discourse Annotation". It's a system of concepts, data formats and tools for the computer assisted transcription and annotation of spoken language, and the analysis of spoken language corpora. This project's source code has moved to https://github.com/Exmaralda-Org/exmaralda