Search Results for "data structure" - Page 31
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Showing 1040 open source projects for "data structure"
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Qudaich
Performs local sequence alignment for NGS data
Qudaich (queries and unique database alignment inferred by clustering homologs) is a software package for aligning sequences. Qudaich generates the pairwise local alignments between a query dataset against a database. The main design purpose of qudaich is to focus on datasets from next generation sequencing. These the datasets generally have hundreds of thousand sequences or more, and so, the input database should contain large number of sequences. Qudaich is flexible and its algorithmic... -
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cd-hit
Ultrafast program for clustering large set of biological sequences
...CD-HIT is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational and manual efforts in many sequence analysis tasks and aids in understanding the data structure and correct the bias within a dataset. The CD-HIT package has cd-hit, cd-hit-2d, cd-hit-est, cd-hit-est-2d, cd-hit-454, psi-cd-hit, cd-hit-otu, cd-hit-lap, cd-hit-dup and over a dozen scripts for various clustering needs. -
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reco4j-neo4j
Reco4j is a graph-based recommendation engine, this is the neo4j impl
Reco4j is an open source project aims at developing a recommendation framework based on graph data sources. We choose graph databases for several reasons. They are NoSQL databases, so "schemaless". This means that it is possible to extend the basic data structure with intermediate information, i.e. similarity value between item and so on. Moreover, since every information is expressed with properties, nodes and relations, the recommendation process can be customized to work on every graph. ... -
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reco4j-core
Reco4j is a graph-based recommendation engine
Reco4j is an open source project aims at developing a recommendation framework based on graph data sources. We choose graph databases for several reasons. They are NoSQL databases, so "schemaless". This means that it is possible to extend the basic data structure with intermediate information, i.e. similarity value between item and so on. Moreover, since every information is expressed with properties, nodes and relations, the recommendation process can be customized to work on every graph. ... -
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Construct is a python module for bit-level, symmetrical parsing and building of data structures. Complex constructs are formed by a hierarchy of less-complex constructs, as well as user-defined constructs.
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GestureDetect
Gesture detection with Kinect+OpenNI+Unity3D
...Since people do the the same gesture in different ways, before you try a gesture template trained by others, you may need to "play" the skeleton file first to see how the gesture was recorded. Or you may train your own gesture templates directly. See the usage for details. The function is provided in a package for Unity3D. It reads skeleton data from MS Kinect or similar motion capture devices. To acquire skeleton data, we uses OpenNI 1.5.4 because it is an open source library. The scripts in the project are written in c#. The algorithm we use is template matching. The structure of the code is clear and not very complicated. If you want to use it on other platforms, you may pick part of the scripts in the "GestureScripts" folder and try to edit them to fit other SDKs or platforms. ... -
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Stand-alone Java library implementing parser/formatter/comparator/validator for JSON/XML-like text formats oriented on JSON-like object model (list,map,scalar + reflection). Library is designed to maximize adaptivity via set of extendable modules.
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Java/C Comparative Benchmarks
Java and C Comparative Performance Benchmarks
...No language libraries were used to avoid implementation differences. Some of the benchmarks are also implemented in Python and Scala. There are benchmarks for bit twiddling, numerical computing, data structure manipulation, concurrent computing, callouts to native libraries, and, graphics processing units (GPU) utilization. -
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Simple Universal Protocol
Communication Components
SUprotocol is Simple Universal Protocol. Based on RS232 Asynchronous mode. Connect MCU with PC. Data model: 32 BLOCKs as 32bit data. Any Block can be UIN32, INT32, FLOAT,[UINT16:UINT16],[SINT16,SINT16],BYTE[4]-Union Structure PC is master. -
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LaTeX Table Creator
Simple Cross-platform LaTeX table creator with a GUI and console app.
A no frills cross-platform LaTeX table creator. Uses the output of standard spreadsheet software (MS Office, Libre Office, Gnumeric) to create a LaTeX tabular object that contains the specified data. Automatically detects the size of the table. The user can optionaly specify some basic formatting information, such as alignment, borders, bold headings. The user can also select if the input is tab (default) or comma delimited and can disable the tabular structure in the output. This allows the output to b easily appended to an existing table. ... -
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Open Jungo
Open software persistence model
Open Jungo is a flexible entity persistence model that makes it easy to create object-centric components with minimal coding. Unlike most current entity frameworks, Jungo does not require developers to structure their code in any particular way or specify database structures. Open Jungo supports most major proprietary and open source databases as well as well as a built-in highly efficient zero-configuration object-oriented database systems. It requires no external dependencies and... -
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*** IMPORTANT NOTICE *** The source code of the earliest version of the EARMARK Data Structure is now available at http://www.github.com/essepuntato/EarmarkDataStructure Even if the SourceForge repository is still active, it concerns old versions of the API and it is not maintained anymore. *** SERVICE DESCRIPTION *** Extremely Annotational RDF Markup (EARMARK) is an ontological approach to the specification of markup structures on text content.
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hsfft
FFT and Convolution in C
...It is designed to give good performance for non-power of length 2 FFTs. Only 1D , unit-stride implementation for singe core processors available as of now. USAGE HSFFT is designed specifically to handle time series data efficiently. The software is structured very similarly to available open source softwares like FFTW and kissfft. The data structure is almost identical to Mark Borgerding's kissfft implementaion. However, this implementation is lightweight compared to FFTW and should give better performance for non-power of two implementations compared to kissfft in a single core setting. ... -
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A capsule tree is a general purpose, self-balancing tree data structure for large, ordered, data-sets. It is designed to provide the same characteristics as B-trees and B+trees, but built from the ground up for in-memory usage. In other words, there are no provisions for “slow” I/O cases. The original motivation for this tree was a better backend for memory managers. However, the end result was a new sub-category of trees.
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Digital Content Component (DCC) is a self-descriptive unit to encapsulate any kind of content artifact. Designed to be reused and adapted, DCCs encapsulate data and software using a single structure.
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AppInfer
Probabilistic Trie-based Signature for Application Identification
Construct probabilistic signatures for application identification based on the trie data structure. -
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YAFF (Yet Another Factory Framework)
A Powerful Java Factory Framework
A Powerful Java Factory Framework -
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GenOO-HTS
A Modern Perl Framework for High Throughput Sequencing analysis
...The primary aim of GenOO-HTS is to make simple HTS analyses easy and complicated analyses possible. GenOO-HTS models biological entities into Perl objects and provides relevant attributes and methods that allow for the manipulation of high throughput sequencing data. Using GenOO-HTS as a core development module reduces the overhead and complexity of managing the data and the biological entities at hand. GenOO-HTS has been designed to be flexible, easily extendable with modular structure and minimal requirements for external tools and libraries. -
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Redis for Windows
Redis server for Windows
An advanced key-value store. It is often referred to as a data structure server since keys can contain strings, hashes, lists, sets and sorted sets. -
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SAP Pooled Table Viewer
PL/SQL code to allow direct reading of SAP Pooled Tables
SAP has three different types of tables, Pooled tables, direct tables, and clusters. Pooled tables pool together several smaller lists and lookups into one table. The format of the pooled tables is basically Cobol Record structure. This software uses the SAP data dictionary to create oracle views that allow easy querying of the SAP data. This makes it easier to integrate with SAP systems, where you can use database connectivity and bypass the need for ABAP. -
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Predyketide is a stand-alone desktop application which provides a way to observe the resulting structure per elongation of the polyketide chain, and predict the most possible natural product structure. This tool can be helpful in the discovery of new drugs requiring lesser time and effort. The project uses the cdk v.1.5 and cdk-jchempaint-26.
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The Data Structure & Algorithm Library (DSAL) is a library of classical data structure and algorithm.
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Compress-Music supports flac, mp3, wma, aac + more. It's a Powershell script that traverses a directory structure for audio (many formats) and converts to mp3 in a duplicate directory. Supports gapless, album replaygain, updating tags only.
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Java HTTP REST interface
Base for HTTP-REST Java application
Simplified multithreaded Java HTTP server able to interpret GET/POST requests. Example dummy app included. It uses Apache2 as a proxy for AJAX calls and jQuery code as a client. ------- Requirements: For the Java HTTP server: - J2SE (SDK for compilation) For the exampe web app: - Apache2 with mod_rewrite and mod_proxy Client-side for the web app: - www browser supporting JS with jQuery --- Setup: - run Server.class from Java server files (java Server) in a... -
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SEFS - Self Expiring File System
File system that expires files using an expire date
...In this file system we can highlight interested files with an expiration date so that they may get deleted or moved to a special location where we can attend to them and clear off what we do not want anymore. A separate data structure per file is used to store additional attributes about each file created in this file system and desired behavior is achieved by modifying these attributes accordingly. These additional attributes are saved in the Extended File Attributes which is a file system feature supported by most of the Linux file systems. This file system is implemented as an user space file system on top of FUSE framework
