Search Results for "hidden markov java" - Page 3
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Showing 121 open source projects for "hidden markov java"
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Red Hat Enterprise Linux (RHEL) on Microsoft Azure provides a secure, reliable, and flexible foundation for your cloud infrastructure. Red Hat Enterprise Linux on Microsoft Azure is ideal for enterprises seeking to enhance their cloud environment with seamless integration, consistent performance, and comprehensive support.
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ChangeGear provides IT staff with the functions required to manage everything from ticketing to incident, change and asset management and more. ChangeGear includes a virtual agent, self-service portals and AI-based features to support analyst and end user productivity.
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vbTPM
Variational Bayes for tethered particle motion
vbTPM is an analysis package aimed at analyzing time series from a single molecule technique called tethered particle motion, which are common for in vitro investigations of protein-nucleic acid interactions. vbTPM uses a variational approach to hidden Markov models, and resembles recent methods for single molecule FRET (http://vbfret.sourcefore.net/) and single particle tracking (http://vbspt.sourceforge.net/) data. 2014-08-12: NAR manuscript in print! http://dx.doi.org/10.1093/nar... -
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Protdraw
Create portable, flexible domain drawings of protein sequences
... of hidden Markov models and formats results for ProtDraw. Highest-scoring domains are selected in cases of overlap. Domain drawings may be organized by sequence classification. -
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DJVUEd
GUI for editing djvu files metadata
GUI for editing djvu files metadata. Can help avoid some mistakes during editing annotations, oulines, hidden text and naming pages. Based on djvused program from DjVuLibre package. -
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GLProbs
GLProbs: Aligning multiple sequences adaptively
GLProbs is a simple and effective approach to improve the accuracy of multiple sequence alignment. We use a natural measure to estimate the similarity of the input sequences, and based on this measure, we align the input sequences differently. To test the effectiveness of this approach, we have implemented a multiple sequence alignment tool called GLProbs and compared its performance with a dozen leading alignment tools on three benchmark alignment databases, and GLProbs’s alignments has the... -
Collaborate is customizable case management software for non-profits and social services agencies with teams of 5+ staff.
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TR Data Sync
Synchronization of data without the fuss.
TR Data Sync is an application for folder synchronisation. -
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High-order HMM in Java
A duration high-order hidden Markov model (DHO-HMM) in Java.
This project provides an implementation of duration high-order hidden Markov model (DHO-HMM) in Java. It is compactible with JDK 5 & 6. It was used in the author's research on speech recognition of Mandarin digits. There are some Chinese words in this project and I am afraid that I don't have enough time to translate to English recently. -
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Electronic Data Tags
Electronic Data Tags value storage API For java.
EDT is an API For java designed to allow you to store data from your programs in files easily. EDT is separated into two parts: EDT Basic (just called EDT) and EDTA (Advanced). EDT Basic stores only String values, while EDTA uses EDT Basic to store String, int, boolean, float, long, double, and byte values. To make accessing values easier, EDT and EDTA allow you to assign a name, like "FileLocation", to a value, instead of an integer, like in an array. The values are stored as ISO-8859-1... -
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MRHMMs
multivariate regression hidden Markov models
It includes a various hidden Markov models: regression, logistic regression, hidden Markov models, and emission probability density of a mixture of multivariate Normal distributions. Also available at https://github.com/yonoklee/MRHMMs Work in progress (Jun 20, 2021 - ) -
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HYDRA is an open-source, platform-neutral library for performing Markov Chain Monte Carlo. It implements the logic of standard MCMC samplers within a framework designed to be easy to use and to extend while allowing integration with other software to
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Don’t let unpaid invoices limit your business’s growth. EBizCharge plugs directly into the tools your business already uses to speed up payment collection.
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HMM Speech Recognition in Matlab
A speech recognition system using Matlab/Simulink/Stateflow.
This project provide hidden Markov model speech recognition system by using Matlab/Simulink/Stateflow. -
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QuasiRecomb
Probabilistic inference of viral Quasispecies
Please get the binary latest version at https://github.com/armintoepfer/QuasiRecomb/releases Description: RNA viruses are present in a single host as a population of different but related strains. This population, shaped by the combination of genetic change and selection, is called quasispecies. Genetic change is due to both point mutations and recombination events. We present a jumping hidden Markov model that describes the generation of the viral quasispecies and a method to infer its... -
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JProGraM (PRObabilistic GRAphical Models in Java) is a statistical machine learning library. It supports statistical modeling and data analysis along three main directions: (1) probabilistic graphical models (Bayesian networks, Markov random fields, dependency networks, hybrid random fields); (2) parametric, semiparametric, and nonparametric density estimation (Gaussian models, nonparanormal estimators, Parzen windows, Nadaraya-Watson estimator); (3) generative models for random networks (small...
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CGI-HMM
Find CpG island by HMM
Find CpG island for whole genome/chromosome by Hidden-Markov Mode -
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segment
Solve the Viterbi algorithm in a data stream
It is often necessary to assign a series of discrete values to continuosly variable data sequenced by time, position, etc., thereby parsing the data into fewer and larger segments of variable width. The 'segment' utility takes an input data stream as a Hidden Markov Model and applies the Viterbi algorithm to find the most likely segmentation path through the data. -
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SRM2 Sound Recognizer Mobile 2
A Sound Recognition Framework developed to J2ME plataform
The SRM Framework 2 was developed for the J2ME platform supporting sound recognition dependent and speaker-independent, through the recognition techniques DTW (Dynamic Time Warping) and HMM (Hidden Markov Models), in addition to providing support to the import and export of data any stage of recognition enabling the use of external resources as well as the tool running steps on remote terminals. It has the following characteristics: - DTW - HMM (Discrete Models) - Suports Sound in PCM... -
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JaCHMM
Java Conditioned Hidden Markov Model library
The JaCHMM - the Java Conditioned Hidden Markov Model library - is a complete implementation of a CHMM in Java ready to use either on command line or as a module. The JaCHMM is licenced under the BSD licence. It gives an implementation of the Viterbi, Forward-Backward, Baum-Welch and K-Means algorithms, all adapted for the CHMM. JaCHMM is based on the JaHMM and also designed to achieve reasonable performance without making the code unreadable. Consequently, it offers a good way of applying... -
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gundercrypt [MOVED]
A CLI text encrypting/ciphering program and library for java
** MOVED: to github.com/gundermanc/gundercrypt A CLI text ciphering program and library written in java that makes use of pseudo random numbers and a password (provided by the user) to generate encrypted text by selectively shifting each subsequent letter by a pseudo-random index, encoding it as a letter stored in a hidden position within the String, and then re shifting the encrypted String again by numeric values deduced from a password to provide a dual layer of security. Easily can... -
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...) interface defined here. As a result, the users do not have to learn the access protocol of the various DCI systems since they are hidden behind the BES interface.
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ISWYAD
ISeeWhatYouAreDoing - a tool for remote acces with very! low bandwith.
.../Hidden_Server.zip contains the "serious" version with a useful config.txt, no gui (server should run in background) and uses mainly ftp to get its commands, although you can connect via Tcp/Ip and the client from the Bin/Bin.zip or Bin/Client_Only.zip package. The hidden server has an English readme! For further information about the usage of the program please look at Doc/ or at the readmes in Bin.zip (currently both German, sorry). I hope v0.3.0 will follow till 12/12. -
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EvoPromoter is a JAVA application that detects promoter regions in aligned nucleotide sequences using phylogenetic hidden markov models.
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CvHMM
Discrete Hidden Markov Models based on OpenCV
This project (CvHMM) is an implementation of discrete Hidden Markov Models (HMM) based on OpenCV. It is simple to understand and simple to use. The Zip file contains one header for the implementation and one main.cpp file for a demonstration of how it works. Hope it becomes useful for your projects. -
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Trofast Stavekontrol
Trofast is an intelligent spell checker.
Trofast is an intelligent spell checker library based on statistical analysis developed for the Danish language. It makes use of n-grams, hidden Markov models and the Viterbi-algorithm. -
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DETCT
Differential Expression Transcript Counting Technique pipeline
A perl pipeline for identifying differentially expressed genomic regions from transcript counting experiments. The pipeline first uses a Hidden Markov Model (HMM) to identify genomic regions based on the data from the experiment. During the sample counting step the pipeline removes reads which are suspected as being PCR duplicates. The differential expression analysis is currently performed using the DESeq package from Bioconductor. -
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This Java software implements Profile Hidden Markov Models (PHMMs) for protein classification for the WEKA workbench. Standard PHMMs and newly introduced binary PHMMs are used. In addition the software allows propositionalisation of PHMMs.
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BayesianCortex
simple algorithm for a realtime interactive visual cortex for painting
A paint program where the canvas is the visual cortex of a simple kind of artificial intelligence. You paint with the mouse into its dreams and it responds by changing what you painted gradually. There will also be an API for using it with other programs as a general high-dimensional space. Each pixel's brightness is its own dimension. Bayesian nodes have exactly 3 childs because that is all thats needed to do NAND in a fuzzy way as Bayes' Rule which is NAND at certain extremes. NAND can be...