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GRaPe - a platform-independent software tool for building integrative gene-reaction-protein (GRP) networks. It generates the kinetic equations for each reaction and outputs a SBML document. It also implements two methods for parameter estimation.
Xpresso is a Java API for generating XML. It is thought to be very fast and with a lightweight memory footprint. XML is generated using a stack, which stores the current level of elements. Xpresso needs Java 6 or upper.
NLP4J library is a toolset written in Java for Natural Language Processing. This version is oriented to Document Classification and uses Naive Bayes, TF-IDF, etc. There are also pre-processing tools.
untmpl is a tool for detecting static sections such as headers, footers and menus of HTML documents. Detecting and removing these sections allows access to the actual content of the document.
Olshed is a suite of Java classes enabling online shared editing among multiple distributed Swing applications for general document editing. A simple example implementation using Swing JTextArea class is also included. Documentation is in preparation.
Kinship Editor is a java graphical editor for entering kinship data for further analysis or to display in application-generated diagrams. The document produced is an XML format capable of representing any form of kinship relationships.
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This Java utility removes the Javascript parts from a PDF document. It is based on the iText library. It is useful to avoid injection/phishing attacks.
An image browser using JavaFX. It is intended to be a good alternative to the Flash browsers (such as expose4) that one may find (and why not, supplant them one day).
J2dPathway project are composed of several packages: J2dPathway(biological pathway viewer), Pyrus Pathway Editor (biological CAD), and DNASequenceViewer (platform-independent sequence viewer).
DBToolbox is tool which: extract database model from JDBC connection, check database model against validation rules, generate database model document and validation report.
Engroup is the web enterprise groupware promotes various collaboration methods plus adding company business management modules. Features are included: CRM, HRM, Document Management, Project Management, Chat, Wiki, Forum, News, Todo.
Result Viewer designed to make paper results on orienteering competitions obsolete and instead show results using LCD screens. The result screens can be administrated from an administration application showing status, settings and layout of the screens.
Suiteki is a set of Java J2ME japanese related tools for your mobile phone; word dictionary, kanji dictionary, word lists, flashcards and even a manga viewer! Kana/kanji input/display for non japanese phones! (please see http://suiteki.sourceforge.net)
A Java app for viewing the video and slides of NIER presentations at ICSE09. See http://www.cs.uoregon.edu/events/icse2009/postConf/NIER/ for content. We encourage others to extend/modify our initial viewer. Contact fickas if interested in developing.
AsterFax provides an Email to Fax gateway for Asterisk. AsterFax lets you send an email by Fax. Enter the phone no. in the 'To' address, compose your email message and click send. You can also fax a MS-Word document or other attachment.
PAULUS is an acronym for Planning Analysis of Urban Linkages within Urban Systems. Its purpose is to supply a web-based tool to document the decision processes in the Urban Planning domain.
Orizon is a framework intended to provide tools and facilities to test java sources for security flaws. The main goal is to detect common threats as described in Owasp top 10 vulnerability document.
DOMSY is a DOcument Management SYstem written in Java. It is intended to be used off portable storage devices such as USB memory sticks when roaming between different computers. DOMSY supports grouping of documents as well as references between documents
Quick3dApplet - a java applet for displaying interactive 3d on a webpage. This is a fast renderer that should be viewable on most browsers without the viewer having to load extra plugins (uses java 1.1). It can read the 3ds model format.
Sailing Club Tools is a set of programmes which collate information from various web and local services, creates an attractive Portable Document Format (PDF) and PNG files and can email them to a given email address.
Fire.now is a Firefox plugin that automatically adds your documents to the WhereIsNow latest version discovery service. Everytime you upload a document somewhere, Fire.now integrates the WhereIsNow keys into the file and add it's url to WhereIsNow.