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CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/74
Note as of 2013-09-13: I'm moving this project over to github due to this:
http://www.gluster.org/2013/08/how-far-the-once-mighty-sourceforge-has-fallen/
Feel free to rejoin the more updated versions on
https://github.com/mnott/PDFOCRWrapper
Thanks.
Matthias
--
This is a wrapper written in Java that allows to recursively iterate a directory structure and call an OCR engine on each found PDF on the condition that it hat not yet been called for that PDF. It works well...
Booletin es un buscador de Boletines oficiales (BOE, BOCM, etc.), que incluye un sistema de alertas por correo electrónico. Utiliza Apache Lucene para indexar el contenido en pdf de los boletines oficiales de España.
Farben is a Java-based universal binary file reader and writer. Easily view binary files hierarchically. Edit embedded file metadata in a variety of formats. Identify orphaned files. A wide variety of file formats will be included.
The PDF Form Generator module currently works with properties files only, but additional formats (such as csv, xml, tab delimited etc) will soon be supported.
The JODConverterService is written as a WCF application and provides functionality to convert documents such as .eml, .doc(x), .xls(x), etc. to the PDF format by using the Java library JODConverter which uses a service instance of OpenOffice.org.
A Java library for rendering forms on PDF (may be extended for other formats), based on a Template File (PDF or other type), and an XML description of contents. This library uses the iText package (http://www.lowagie.com/iText/) for PDF manipulation.
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PODR is a PHP mailmerging and converting library mostly designed to parse and convert ODT templates to DOC/PDF. Templating is based on Savant, Conversion uses a webservice of JODConverter. A filter is available to include runtime generated images.
Autshumato PTE (PDF Text Extractor) is a utility application which extracts the text from PDF documents with the aim of making it translatable. It is also able to extract the pages of the PDF document as PNG images.
Toolkit e-formulieren is een opensource toolkit voor het op een gebruikersvriendelijke manier kunnen maken en onderhouden van e-formulieren.
De Toolkit maakt gebruik van Orbeon, en ondersteunt XForms-compliant e-formulieren, evt. met voorinvulling.
CSSToXSLFO is a conversion utility from CSS2 to XSL-FO, which can be converted to PDF, PostScript, etc. It has special support for XHTML. The tool has a number of page-related CSS extensions. It comes with an API in the form of an XML filter.
Application to create PDF document on the fly from any source file format(PRN,HTML,TEXT,CSV) with complete mailing system and reports module. It's made over following library Pdf - IText Web Server- Simple Frame work Database- H2
Small tool that creates a PDF file with thumbnails of all images in a folder. The number of thumbnails per page along with some other settings can be adjusted. Jpg2Pdf uses the iText library for pdf-generating.
dmachinery is a repository and generation framework for document templates, document building blocks like images and businessrules. Templates and parts may be stored in different technologies, e.g. pdf and xsl-fo. Allows on-demand and batch printing.
FO3D describes an XSL-FO standard compliant method for representing 3D content in the FO documents and provides an exemplary extension for the use with Apache FOP (Version 0.95) - available under the Apache License v2.0 - to create 3D PDF documents.
Optex Analyzer is a software to analyze and compare algorithms to solve approximately optimization problems. It has a GUI that allows select a set of input files containing raw algorithm results. The analysis is shown with tables and charts.
Automatically embed Wikipedia topic information into PDF documents via pop up annotations. This relies on the Wikipedia Miner service that is also available on Sourceforge.
Taza is a high performance Java API for batch processing large volumes of data. The API includes a Writer which produces binary files optomized for linear reads and a multi-threaded, event driven Reader which consumes the binary format.
FeedRider is a multi-platform feed reading application. It currently supports RSS 0.90 - RSS 2.0 and Atom 1.0. It is licensed under the GNU Lesser General Public License.
Agido is an extensible Agile Documentation Tool for Agile Development Projects. The documentation can be written in plain text in a wiki style markup and exported to different output formats such as PDF and HTML.