Showing 32 open source projects for "gap analysis"

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  • 1

    wmtsa-python

    Discrete wavelet methods for time series analysis using python

    Several python libraries implement discrete wavelet transforms. However, none of them, or at least none that I know, is aimed at scientific use. This library aims at filling this gap, in particular considering discrete wavelet transform as described by Percival and Walden. This module started as translation of the wmtsa Matlab toolbox (http://www.atmos.washington.edu/~wmtsa/), so most naming conventions and most of the code structure follows their choices. The code uses a mix of python and...
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  • 2

    AFSM_seq

    a simple and rapid method for genome-wide SNP and methylation site

    Reference based analysis 1.Filter the raw reads obtained from Illumina Raw Data (paired-ends)according to your desired stringency, to produce a set of high-quality (HQ) sequences in fastq format. 2.Lignment reads (HQ, Fastq format) against Barcode file (Fasta format) using scanAP program. 3.Trim barcodes and filter paired-ends using trim_seq.pl. Classified paired-ends using fltfastq2pe.pl. to produce output “R1.trim.pair.fastq” and “R2.trim.pair.fastq”. 4.The filtered sequence reads were aligned to the reference genome using the Bowtie2, allowing a maximum of four mismatches and one gap of up to 3 bp. ...
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  • 3

    xPyder PyMOL Plugin

    Analyze and visualize coupled residues and their networks in proteins

    ...PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level.
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  • 4
    Scertify - TechDebt Community

    Scertify - TechDebt Community

    Benchmark code quality and measure Technical Debt of projects in Sonar

    Scertify™ Refactoring Assessment is an open source component dedicated to development & QA teams that provides exclusive benchmark data on Software Quality. It automatically detects the portions of an application that can be refactored, gives valuable information on refactoring strategies, and costs. Though IT departments have matured these last 10 years and have now no doubt on the benefits of a continuous control of code quality, three major concerns were still remaining, without any...
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  • 5

    PL-DAS

    Port Logistics Data Analysis System using Process Mining

    This project is for analyzing operational data from container terminal, applying process mining and port logistics domain knowledge. This project is found by Total Soft Bank, Ltd. and Busan National University, based on ProM framework (http://www.promtools.org) which is also an open source project. This project is sponsored by NIPA (National IT Industry Promotion Agency), Korea.
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  • 6
    General Gap Analysis Software aiming to provide easy to use graphical representations for the management, to define where the actual gap lies in the actual control and its implementation.
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  • 7
    Eduworks' Competency Training and Record Management System (CTRMS) is an app for aiding the user to determine the readiness of a team of people for a project or mission by running a skill gap analysis on those peoples' competencies.
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