Search Results for "alignment" - Page 17
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Showing 492 open source projects for "alignment"
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Vehicle Alignment Tool for Simutrans
Vehicle Alignment Tool for Simutrans
This tool allows Simutrans artists or pak mantainers to better align their vehicles by showing a preview of a convoi for each of the eight Simutrans views. This tool is thought to provide a quick way to fix those small glitches affecting multiple vehicle convois. The individual vehicles can be selected, moved and saved, all in a real-time preview environment. -
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Pontos
Pontos calculates distance matrices from DNA sequence alignments.
...Gaps can be: - all used; - all ignored; - ignored only at the ends of the sequences, in a pairwise manner; - ignored only at the ends, but now globally (in effect trimming the whole alignment to the farthest sequences from the ends). Ambiguities (things like R, Y, N, W, etc. in a DNA sequence) can be treated like: - consider ambiguities as always different; - consider ambiguity as partially different (e.g. R would be 0.5 different from A or G); - ignore ambiguities in each pairwise comparison; - remove all columns, globally, that show any ambiguity. ... -
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mPSQed
Alignment editor and multiplex pyrosequencing assay designer
Molecular-based diagnostic assays are the gold standard for infectious diseases today, since they allow a rapid and sensitive identification and typing of various pathogens. While PCR can be designed to be specific for a certain pathogen, a subsequent sequence analysis is frequently required for confirmation or typing. The design of appropriate PCR-based assays is a complex task, especially when conserved discriminating polymorphisms are rare or if the number of types which need to be... -
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JFinisher
JFinisher is software for alignment, editing and manipulation DNA seqs
JFinisher is software for alignment, editing and manipulation of biological sequences. It aims to assist in the finishing of genome assembly. Starting from a reference sequence, the program align contigs using Smith-Waterman local alignment algoritm with auxiliary methods, allowing management of the alignments generated. It has graphical interface for manipulation and visualization of the actions, uniting features that help in editing the sequences. -
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KADMOS provides a lightweight API for alignment of OWL 2 ontologies. It is based on the OWL API v3.
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Fast Unsupervised Sentence Aligner described in "Improved unsupervised sentence alignment for symmetrical and asymmetrical parallel corpora", COLING 2010. NEWS : release 1.0b : bug fixed (release1.0a deprecated).
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CGAP-Align
A new time efficient read alignment tool built on the top of BWA
See Wiki page for details. -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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GuiTope
Identifies significant regions in proteins from peptide selections.
...It is often of interest to compare the selected peptide sequences to the natural protein binding partners to infer the exact binding site or the importance of particular residues. GuiTope provides a convenient method for comparing selected peptide sequences to protein sequences, including flexible alignment parameters, novel alignment features, ability to search a database, and statistical significance of results. It was implemented in Visual Basic, using the Microsoft .NET framework. -
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ZORRO is a probabilistic masking program that assigns confidence scores to each column in a multiple seqeunce alignment. These scores can then be used to account for alignment accuracy in phylogenetic inference pipelines.
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Mass Spectrometry analysis Pipeline
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Alignment of the assembled sequences to a reference genome is a common way to obtain a likely order for the contigs, though most of times the final decision is taken by the user. We present the jContigSort, a tool that sorts the genome contigs.
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AstroMate
Please see AstroTortilla -project instead.
AstroMate is a project for automating repeating astrophotography tasks, such as equatorial mount polar alignment and target centering, by integrating existing tools and especially plate solving to the ASCOM telescope control interface. This project has been replaced by AstroTortilla. -
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BFAST facilitates the fast and accurate mapping of short reads to reference sequences, where mapping billions of short reads with variants is of utmost importance.
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Extract and append variables in parallel from a NetCDF file. Uses combine-batched asynchronous I/O with Parallel-NetCDF 1.2. Arena memory is managed to prevent swapping and fragmentation. Allows header padding, variable alignment and 64bit format.
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SolSNP is a Java-based DNA variant calling tool for Next-Generation Sequencing alignment data. SolSNP uses a modified Kolmogorov-Smirnov statistic and data filtering to confidently and quickly call variants on high-coverage aligned genomes.
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Bioinformatics Perl extension for the analysis of antibody variable domain repertoires. Suitable for mammalian repertoire sequences obtained either by Sanger or 454 sequencing. Methods published in Glanville, Zhai, Berka et al, PNAS 2009.
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This Java software permits to control a real robot over a WiFi connection from one or more desktop client. Built in support for Pololu, Phidgets, SparkFun and any RS232 device. You can build and run your own robot by just editing a simple config file
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We will develop a Sequence alignment LIMS System to integrate multiple NGS(Next Generation Sequencing) System. The system will be developed, based on EJB technologies.
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Blueprint CSS
A CSS framework that aims to cut down on your CSS development time
...The framework includes mixins, modifier classes, and responsive breakpoints so layouts adapt fluidly across screen sizes. By starting with a consistent baseline, Blueprint CSS reduces cross-browser quirks and gives designers confidence in spacing, proportion, and element alignment. Teams often use it as the “CSS backbone” of internal tools, web products, or component libraries. -
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Built around LDC's champollion sentence aligner kernel, Champollion Tool Kit (CTK) aims to providing ready-to-use parallel text sentence alignment tools for as many language pairs as possible.