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Mando is a human computer interface using a camera and a projector. The camera is calibrated against a projection area to determine the position of physical pointer(pen, LED, laser pointer light...) which is then used to virtually move X11 pointer.
Packages for Ubuntu may be found here: https://launchpad.net/~shoden/+archive/mando
An easy to use presentation software with focus on PDF documents. External display / projector presentations: PDF, images, text and whiteboard with annotations; intuitive user interface, optimal mouse and pen input handling.
Whyteboard is a painting whiteboard application for Linux and Windows, that allows the annotation of PDF and PostScript documents, and image files with common drawing tools.