CBMPy
PySCeS Constraint Based Modelling
...CBMPy supports the latest standards for encoding CBM models encoding, SBML L3 FBC, COBRA as well as MIRIAM compliant RDF and custom annotations.
Its architecture is both extensible and flexible using data structures that are intuitive to the biologist while transparently translating these into the underlying mathematical structures.
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CBMPy implements popular analyses such as FBA, FVA, element/charge balancing, network analysis and model editing as well as advanced methods developed for the ecosystem modelling.
CBMPy supports user interaction via:
- interactive console or as a library for advanced use
- GUI, visual representation of the model, analysis methods
- a SOAP based webAPI exposes high level functionality via web services