openSEQ
NGS compute distro proloaded with pipeline analysis software
... tab links to our pipeline constructer. The second homepage tab links to a xterm session on the client.
Software included (location - name):
path - biobambam
path - bwa
path - bowtie2
path - bowtie
path - cufflinks
path - bcftools
path - tophat
path - scalpel
path - samtools
path - sra-toolkit
path - bamtools
path - delly
path - delly-parallel
path - picard-tools
path - fastahack
path - twoBitToFa
~/prog/java/ - mutect
~/prog/python/ - platypus
~/prog/java/ - gatk