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STDProject (Simple Tree Driven Project) is a modeling tool for software development projects. It will let you build your project, watch its consistency, generate documentation and reuse work from one project to another.
LightUML is an Eclipse(TM) (www.eclipse.org) integration of UMLGraph (www.spinellis.gr/sw/umlgraph/), a lightweight tool for generating class diagrams from Javaprojects and packages. Previously installed GraphViz (www.graphviz.org) is required!
JAG - the Java Application Generator - is a 100% Java application that generates working projects containing complete, best-of-breed J2EE applications.
JLayerCheck checks package dependencies in Javaprojects to ensure that they match the desired architecture. Packages are grouped into modules and dependencies are specified. It can also find cycles and orphaned classes.