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pyWeb is a Literate Programming tool that will work with any markup language and any programming langauge. The idea is to allow you to create great documentation with as constraints or limitations.
JReferences is a tool to store and retrieve bibliographic references from a file or MySQL database.
It reads BibTeXML, DocBook XML and RIS type references, and can output these and BibTex.
A bibtex like alternative is also provided for DocBook XML docu
SchemaDoc is a XML-based markup language for documenting XML schemas. The work products include both the vocabulary and a set of tools for combining it with the schema source (e.g. a DTD) to produce documentation in HTML, XML DocBook, LaTeX, etc.