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BibTeXlib is a BibTeX library written in JAVA. You can use it to extract information from BibTeX files, manipulate this information, and save it to BibTeX files.
TeX4Java is a parser for the TeX language written in Java. The boxworld is created as Java objects providing an API to create own representations of the document. TeX4Java includes two representations as well: TeXImage and TeXPresenter.
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JBib2HTML is a Java based software that converts bibtex files to HTML format. It comes with predefined conversion templates and is easily extensible so that you can create your own custom implementations of exports.
BibTeXlipse is an Eclipse plugin for managing and analyse bibliography databases. Mainly for BibTeX databases, but will import and export many other bibliographic formats.
It's currently in planning phase.