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JPIV is a platform independent, graphical stand-alone application for Particle Image Velocimetry (PIV) written in Java. PIV is an optical technique for measuring fluid flow velocities.
JPIV moved to GitHub. Please visit us at: https://eguvep.github.io/jpiv/
Image analysis estimating cell density in arrayed microbial cultures
Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow:
http://research.ncl.ac.uk/qfa/
Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package:
http://qfa.r-forge.r-project.org/
This is the version presented, used and...