Search Results for "python data analysis"
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Showing 97 open source projects for "python data analysis"
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FastQC
A quality control analysis tool for high throughput sequencing data
FastQC is a quality control analysis tool designed to spot potential problems in high throughput sequencing datasets. Its goal is to provide a simple way by which to check the quality of raw sequence data coming from high throughput sequencing pipelines. It does this by running a modular set of analyses on one or more raw sequence files in fastq or bam format. It then produces a report summarizing the results, and highlighting any areas where the library may appear unusual. This should... -
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asammdf
Fast Python reader and editor for ASAM MDF / MF4 (Measurement Format)
*asammdf* is a fast Python parser and editor for ASAM (Associtation for Standardisation of Automation and Measuring Systems) MDF / MF4 (Measurement Data Format) files. It supports MDF versions 2 (.dat), 3 (.mdf) and 4 (.mf4). *asammdf* works on Python 2.7, and Python >= 3.4 -
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KherveFitting
Fit X-ray Photoelectron Spectroscopy (XPS) and Raman data
KherveFitting is a full featured XPS & now Raman fitting software for Windows & macOS that is simple and easy to use. KherveFitting can open Excel files (.xlsx) or import/convert .vms, .avg, .kal, .spe (Thermo, Kratos, Specs, Scienta, Omicron, Phi) files into Excel format. 5 background types available: Tougaard, Shirley, Smart, Adaptive Smart. Various peak fitting models: Product and Sum of Gaussian and Lorentzian (GL & SGL), Voigt, Asymmetric Lorentzian (LA), Doniac-Sunjic (G*DS) and many... -
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GeigerLog
Python program for Geiger counters and Environmental Sensors
GeigerLog is a combination of data logger, presenter, and analyzer, and is now released in version 2.0.0! New: Gamma Spectra - can now be displayed, calibrated, and evaluated in GeigerLog! Based on Python (Version 3), it runs on Linux, Windows, Macs, Raspberry Pi, and other. GeigerLog is WiFi-enabled for servers and clients; it can be monitored by SmartPhone. Initially developed for Geiger counters, it is now a more universal tool, which equally well handles data like temperature... -
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QUAST
Quality Assessment Tool for Genome Assemblies
... analysis results in summary tables (in plain text, tab-separated, and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy-to-navigate file. QUAST and its three follow-up papers (MetaQUAST, Icarus, QUAST-LG) papers were published in Bioinformatics; the last paper (WebQUAST) is out in Nucl Acid Research. -
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xrayutilities
a package with useful scripts for X-ray diffraction physicists
xrayutilities is a python package used to analyze x-ray diffraction data. It can support with performing diffraction experiments and used for common steps in the data analysis. It can read experimental data from several data formats (spec, edf, xrdml, ...); convert them to reciprocal space for arbitrary goniometer geometries and different detector systems (point, linear as well as area detectors); for further processing the data can be gridded (transformed to a regular grid). More... -
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Gait Analysis Graphical User Interface
Extracts gait parameters from 120 fps video of mouse walking
This project enables behavioral scoring of mouse gait using MATLAB. This was developed and used in the laboratory of Veronique VanderHorst, MD PhD at Beth Israel Deaconess/Harvard Medical School. First, a GUI displays videos of mice walking on a custom apparatus and enables the user to manually detect paw position. This data is saved. Additional functions take this spatiotemporal information and extract commonly used gait parameters, which are then exported to a MATLAB structure to be used... -
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QXRD is software for the acquisition and analysis of X-ray data taken with 2 dimensional detectors. The software can drive a Perkin Elmer XRD series flat panel detector and can be remote-controlled via a socket interface, or directly from SPEC
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itom
itom - an Open Source Measurement, Automation and Evaluation Software
itom is an open source software suite for operating measurement systems, laboratory automation and data evaluation. One main application of itom is the development and operation of sensor and measurement system for instance in a laboratory environment. Therefore, the software has to be able to communicate with a wide range of different hardware systems, such as cameras or actuators and should provide a diversified and as complete as possible set of evaluation and data processing methods... -
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Firmware mod for the GWInstek GPP-x32x series lab bench supply.
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Orbit Determination Toolbox (ODTBX)
Advanced mission simulation and analysis tool
... of estimation commands that incorporate Monte Carlo data simulation, linear covariance analysis, and measurement processing at a generic level. -
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MSGraph is a program designed for the interactive, fast, qualitative analysis of mass spectrometric (MS) data. It is a tool to provide fast and simple access to all the information contained in an LC/MS analysis run.
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pydatascope
Software oscilloscope using Python and tkinter
Software oscilloscope using Python and tkinter. Supports multiple sources: socket, file, audio, USB. Displays data by samples, time or frequency. Scales the input automatically or manually. -
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lomb
Lomb_Scargle periodogram
The Lomb-Scargle periodogram is a highly sensitive tool in the search for rhythms in both evenly or unevenly sampled data. Researchers may want to use it without having to install and learn a scripting language such as R, Julia, or Python. In all of these languages, Lomb-Scargle periodograms modules are indeed available. Here, I provide executables for Mac, Linux, and Windows designed to compute the Lomb-Scargle periodogram for data stored in a comma separated file (.csv, as can be created e.g... -
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weatherPi
An extensible weather sensor recording network, based on Raspberry Pis
A distributed network of sensors with a central data store, to record environmental data. Project goals include: * to serve as a teaching outlet for: ** sensor programming ** distributed data collecting ** web APIs ** database ** web UI for numerical data ** graphing data sensibly It also gives me some infotainment in new (to me) technologies, and as an excuse to scatter ever more Raspberry Pis around my home. -
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Java API for VISA Devices
Java wrapper for native VISA library and TDS3000 oscilloscope driver
Write VISA instrument drivers in Java for Windows and Linux. Maybe the best way to give a full description is to explain the history of this project. History: This instrument driver project is part of of a non open source data acquisition and analysis project used at Colorado School of Mines, JSeisLab. JSeisLab is a Java port of its predecessor "Spectrum Division for Windows" which is written in VB 6.0. Design: I created a 64-bit JNA wrapper with IVI's visa.h version 5.0 as input... -
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LaueTools
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation. Python 3 Code and new features are now at: https://gitlab.esrf.fr/micha/lauetools -
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TEACUP
TCP Experiment Automation Controlled Using Python
... congestion control algorithm), an experiment is made up of multiple tests. For each experiment and test, TEACUP collects a range of data, such as tcpdump files of traffic seen or TCP stack information (e.g. using Web10G). TEACUP also collects a variety of metadata from the end hosts and bottleneck router, such as the actual OS/kernel version(s) used. TEACUP also provides some simple tools for analysing the results of experiments, such as plotting a flow's experienced RTT over time. -
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Spectral-SpecPro
Spectral - software for manipulating optical spectroscopy data
Spectral-SpecPro helps with the manipulation of optical spectroscopy data. Spectral takes files produced by Jasco instruments (uv-vis absorbance, fluorescence, circular dichroism readings as a function of wavelength, temperature, or time) and facilitates basic operations such as unit conversion (CD spectra), conversion into the format taken by CDPro (estimation of secondary structure; CD spectra), scatter correction (absorbance spectra), smoothing, re-sampling of the x-axis, and generic... -
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CvMob is an Open Source tool to automatic visual analysis of human movement. The software calculates the optical flow to generate data about trajectory, velocity and acceleration using low-quality videos. For more informations, please visit our website: http://www.cvmob.ufba.br/
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tv16k7
trace viewer and bus decoders for data captured by Agilent 16700 LA
A tool for graphical analysis of digital traces recorded by Agilent's Logic Analyzers like HP16700. It is possible to perform higher level bus protocol decoding and parsing with help of "search" tab. These tabs are used to select the Bus Decoder (plugin shared library), configure Bus Decoder parameters and execute higher level analysis. The tool tries to be self descriptive and get as many information as possible from HP16700 for better documenting labor: e.g. test cases, spotted issues and so... -
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Composight is a cross-platform toolkit for 3D-image processing in the domain of composite materials science. It is written in C++ and provides small, problem-specific applications for viewing, filtering and segmentation of volumetric data such as micro-CT scans. The main objective is not to provide yet another complex application for volume data visualization and medical image processing. Instead, Composight is a collection of small and simple apps that have already been successfully used...
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Command line FFT
A simple command line utility to produce an FFT/IFFT of ASCII data
Ever had a bunch of ASCII data that you would like to have a quick look at in frequency domain, but don't want to fire up some bulky analysis software package just for that? Well, I have... So I wrote this tiny tool. It is based on fftw (www.fftw.org) and boost's program options (boost.org). cli-fft is really simple: All it does is to receive ASCII data from a file or standard in, FFT it and write out the result into a file or to standard out. -
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TESTIMAGES
Testing images for scientific purposes
The TESTIMAGES archive is a huge and free collection of sample images designed for analysis and quality assessment of different kinds of displays and image processing techniques. The archive includes more than 2 million images originally acquired and divided in three different categories: SAMPLING and SAMPLING_PATTERNS (aimed at testing resampling algorithms), COLOR (aimed at testing color rendering on different displays) and PATTERNS (aimed at testing the rendering of standard geometrical... -
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Android GpsPro
Get raw GPS data on your Android device
With this Android Gps Pro application, you can get raw GPS data and take screenshots in order to remember the actual GPS coordinates of your Android device.
