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Apache Commons VFS utilities such as a bridge to the Apache Mina FTP Server, a bridge to the Apache Mina SSHD / SCP / SFTP server and a scriptable Java Shell / Console providing a Command Line Interface with VFS file system commands and operations.
scponly is an alternative 'shell' (of sorts) for system administrators who would like to provide access to remote users to both read and write local files without providing any remote execution priviledges.
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KontrolPack is a cross-platform network controller. The objective is to improve system interoperability by connecting computers, regardless of their operating system. Remote access, remote shell, filetransfer, etc...
The Distribulator: Distributed Computing For The Rest Of Us. This is an SSH-based command execution and filetransfer utility that includes support for batch, console, and shell integration modes, multiple server enviornments, and full audit logs.
jkl is console file manager for UN*X systems. It is inspired by popular FAR manager for Windows - all of it`s functionality is provided by plugins, so it could be easily extended with new functions (i.e. FTP client, compression tools...)