Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
Desktop search application
DocFetcher is an Open Source desktop search application: It allows you to search the contents of files on your computer. — You can think of it as Google for your local files. The application runs on Windows, Linux and Mac OS X.
One hundred command line tools in a small and portable binary.
Create zip files, extract zip files, replace text in files, search in files using expressions, stream text editor, instant command line ftp and http server, send folder via network, copy folder excluding sub folders and files, find duplicate files, run a command on all files of a folder, split and join large files, make md5 checksum lists of files, remove tab characters, convert CR/LF, list newest or biggest files of a folder, compare folders, treesize, show first or last lines of a file, find filenames fast using index files, rename many files using expressions, copy part of a file, change times of a file, set file time from filename, print colored text to terminal, convert csv to tab separated, download files from web, send http or udp requests, print tcp or udp traffic, create hexdump of files, join many text files into one, list nested .zip .tar .tar.gz .tar.bz2 archive contents. Fully portable, for USB stick, without installation. For Windows, Linux and Mac OS/X.
Powerful desktop search app for Windows, Linux and Mac
Power searching on your desktop without the pain. Perform powerful desktop searches without having to index your system using regular expressions. Graphical equivalent to find/grep. Available for Windows (JAVA) and Linux (Gnome & KDE) and easy to translate into your locale.
Shell history suggest box - easily view, navigate, search your history
Are you looking for a command that you used recently? Do you want to avoid the need to write long commands over and over again despite you used them recently? Are you looking for a tool that is able to manage your favorite commands? HSTR is a command line utility that brings improved Bash command completion from the history. It aims to make completion easier and more efficient than Ctrl-r. Apart to the completion, history can be managed (you can remove commands that e.g. contain sensitive information like passwords) and bookmark your favorite commands.
Find, select, delete empty folders. Use the ignore list and others.
Empty Directories Finder expires empty directories and allows you to conveniently select the required directories before deleting.
Useful console application to search for largest files on file systems
sfbf (Search For Big Files) is a useful console application to search for largest files on file systems. It brings features such as : - Fast file search to locate largest files - Configurable search depth - Various output formats (txt, json, xml, html, csv) - Regular expression matching This project is licensed under the WTFPL (Do What The Fuck You Want To Public License, Version 2) Copyright © 2017 spypunk email@example.com This work is free. You can redistribute it and/or modify it under the terms of the Do What The Fuck You Want To Public License, Version 2, as published by Sam Hocevar. See the COPYING file for more details.