Bowtie, an ultrafast, memory-efficient short read aligner for short DNA sequences (reads) from next-gen sequencers. Please cite: Langmead B, et al. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 10:R25.
Desktop search application
DocFetcher is an Open Source desktop search application: It allows you to search the contents of files on your computer. — You can think of it as Google for your local files. The application runs on Windows, Linux and Mac OS X.
One hundred command line tools in a small and portable binary.
Replace text in files, search in files using expressions, stream text editor, instant command line ftp and http server, send folder via network, copy folder excluding sub folders and files, find duplicate files, run a command on all files of a folder, split and join large files, make md5 checksum lists of files, remove tab characters, convert CR/LF, list newest or biggest files of a folder, compare folders, treesize, show first or last lines of a file, find filenames fast using index files, rename many files using expressions, copy part of a file, change times of a file, delete files in selected sub folders, set file time from filename, print colored text to terminal, convert csv to tab separated, download files from web, send http or udp requests, print tcp or udp traffic, create hexdump of files, join many text files into one, list nested .zip .tar .tar.gz .tar.bz2 archive contents. Fully portable, for USB stick, without installation. For Windows, Linux and Mac OS/X.
deletes junk files to free disk space and improve privacy
BleachBit frees disk space and maintains privacy. Cleans cache, Internet history, temporary files, logs, cookies, Firefox, Google Chrome, Flash, Windows, Linux, and more. Downloads are at www.bleachbit.org and source code is at GitHub.
Launchy is a free utility designed to help you forget about your start menu, your desktop icons, and your file manager. Launchy indexes and launches your applications, documents, project files, folders, and bookmarks with just a few keystrokes!
GDuplicateFinder - A FREE Groovy way to find file duplicates!
Unlike other duplicate finders such as Easy Duplicate File Finder, Auslogics Duplicate File Finder, MindGems Fast Duplicate File Finder, Duplicate Cleaner, DupFiles and others, GDuplicateFinder is a FREE cross-platform application, with the ability to search among not just local files, but files on the network, such as a Windows or a Linux share using VFS library. Taking advantage of Groovy facilities and GPars power to process in parallel, GDuplicateFinder will help you get rid of those duplicates you always wanted to dispose in an easy and friendly way. Looking for translators to translate the app! If you'd like to help me, just send me an e-mail to firstname.lastname@example.org. Thanks in advance If you want to help me continue improving this app, donate some money through paypal! https://www.paypal.com/cgi-bin/webscr?cmd=_s-xclick&hosted_button_id=fezuqqg9t6j6y
Power searching without the pain. Perform powerful desktop searches without having to index your system using regular expressions. Graphical equivalent to grep.
DuMP3 is a duplicate and similar file finder.
DuMP3 is a duplicate and similar file finder. It finds exact duplicate binaries by hash, similar text files by substring content, images (JPG, BMP, GIF, PNG, etc) by color and audio files (MP3, WAV, OGG, etc) by wave data. Future: fonts, video.
Fast and powerful search engine
Torrent Search Engine: TorrentSearch is a framework and script language for searching Bit Torrent websites and search engines for torrents.
PHP Security Scanner is a tool written in PHP intended to search PHP code for vulnarabilities. MySQL DB stores patterns to search for as well as the results from the search. The tool can scan any directory on the file system.
Datafari is an advanced open source enterprise search solution!
This is a Word-Count utility. You can use this utility to find occurances of one or more strings in a given directory. You can search strings by specifying case-sensitive or whole word type. NOTE: This utility is tested on WinXP Professional and RH EL3.
SURF FIND is a simple and fast grep-like text search software, which keeps the previous search results as separate tabs. It also implements file caching mechanism so that the subsequent searches for the same set of files will be completed faster. Each tab has the list of found files and lines on the left, and the text viewer on the right to show the selected line on the list. On the text viewer, user can select a new keyword and start a new search instantly. On the list view, external editor can be invoked by double clicks. Also, the found files can be drag & dropped to other window. This project is a clone of TabTextFinder (http://sourceforge.jp/projects/tabtextfinder/simple/) dedicated to Japanese character sets with automatic encoding detection. This clone omits the automatic encoding detection and uses the default encoding by default.
Find, select, delete empty folders. Use the ignore list and others.
Empty Directories Finder expires empty directories and allows you to conveniently select the required directories before deleting.
Search by Image either in desktop or internet
Goggles for desktop & Internet lets you search any person or thing from your album,wallpaper,or even from internet websites like facebook.
Lotus Notes filter for the Recoll text search tool
A Recoll filter that supports the inclusion of Lotus Notes databases in the Recoll text search index.
Fast Text Indexing and Searching
Built in SWT. It indexes and searches a large number of text files for given keywords.
Easy way to search files and folders
Like the Linux "locate" and "updatedb", "winlocate" is a very simple solution for finding files and folders in a windows environment system. All is done by using 2 scripts (.BAT), some GNU tools and Sqlite3. I hope you will enjoy this release.
Shell history suggest box - easily view, navigate, search your history
Are you looking for a command that you used recently? Do you want to avoid the need to write long commands over and over again despite you used them recently? Are you looking for a tool that is able to manage your favorite commands? HSTR is a command line utility that brings improved Bash command completion from the history. It aims to make completion easier and more efficient than Ctrl-r. Apart to the completion, history can be managed (you can remove commands that e.g. contain sensitive information like passwords) and bookmark your favorite commands.
Plait (pronounced "play") is a command-line jukebox and music player front-end. It understands brief queries that pick a single song, mix queries that combine works from multiple artists, and stream queries that find Shoutcast radio streams.
Do searches in the Windows registry
It's a powerful tool to do searches, easily and fastly, in the Windows registry. The utility also allow you to delete all keys you want. In order to use the full potential of the program and find all keys, It's recommended to start it with administrator privileges. In the new version: -bug fixed -performance improvement To run the program, It's required .NET Framework 4.
This is a simple Java front-end for the UNIX grep. It lets you search file contents also if you are not familiar with the command line or the regular expression syntax.
Search for duplicate files fast and with manual filters. Portable application/no need for installation
CD/DVD cataloguing tool with support for ZIP archive and file metadata scanning. Can browse & search volumes offline and search within archives and selected metadata fields. Can import/export database.
Combine is an open system for crawling Internet resources. It can be used both as a general and focused crawler. If you want to download Web-pages pertaining to a particular topic (like 'Carnivorous Plants') Then Combine is the system for you!