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All future developments will be implemented in the new MATLAB toolbox SciXMiner, please visit
https://sourceforge.net/projects/scixminer/
to download the newest version.
The former Matlab toolbox Gait-CAD was designed for the visualization and analysis of time series and features with a special focus to data mining problems including classification, regression, and clustering.
RIPE (Regulatory network Inference from joint Perturbation and Expression data) is a novel three-step method that integrates both perturbation data and steady state gene expression data in order to estimate a regulatory network. The ripe package is written in R, with additional functionality provided by a MATLAB executable file. The executable file uses a runtime engine called the MATLAB Compiler Runtime (MCR). The executable for different architectures is distributed on this site together...
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This project aims to provide open source software implementing the Wedge algorithm for the estimation of parameters in dynamical systems models. This project also seeks to create tutorials and resources for those using Wedge.