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Showing 42 open source projects for "can="
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1
FieldTrip
The MATLAB toolbox for MEG, EEG and iEEG analysis
...It supports the data formats of all major MEG systems (CTF, Neuromag/Elekta/Megin, BTi/4D, Yokogawa/Ricoh, FieldLine) and of most popular EEG systems, and new formats can be added easily. FieldTrip contains high-level functions that you can use to construct your own analysis protocols in MATLAB. Furthermore, it easily allows methods researchers to incorporate new methods for EEG/MEG analysis. -
2
GIT quick statistics
An efficient way to access various statistics in git repository
...Extracting this information is not always trivial, mostly because there are a gadzillion options to a gadzillion git commands. For those who prefer to utilize command-line options, git-quick-stats also has a non-interactive mode supporting both short and long options. You can change to the legacy color scheme by toggling the variable _MENU_THEME between default and legacy. You can set variable _GIT_LIMIT for limited output. It will affect the "changelogs" and "branch tree" options. You can also exclude files from the stats. Note that it works with any alphanumeric, glob, or regex that git respects. -
3
Benchee
Easy and extensible benchmarking in Elixir
...It then shows different statistical values like average, standard deviation etc. The aforementioned plugins like benchee_html make it possible to generate nice-looking HTML reports, where individual graphs can also be exported as PNG images. first runs the functions for a given warmup time without recording the results, to simulate a "warm"/running system. Plugin/extensible-friendly architecture so you can use different formats to display benchmarking results as HTML, markdown, JSON, and more. -
4
STK
a Small (Matlab/Octave) Toolbox for Kriging
The STK is a (not so) Small Toolbox for Kriging. Its primary focus in on the interpolation / regression technique known as kriging, which is very closely related to Splines and Radial Basis Functions, and can be interpreted as a non-parametric Bayesian method using a Gaussian Process (GP) prior. The STK also provides tools for the sequential and non-sequential design of experiments. Even though it is, currently, mostly geared towards the Design and Analysis of Computer Experiments (DACE), the STK can be useful for other applications areas (such as Geostatistics, Machine Learning, Non-parametric Regression, etc.). -
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5
Statistics101 - Resampling Statistics
Use simulation to perform statistical analyses.
...Julian Simon (https://www.juliansimon.com/) and Peter Bruce (https://www.scientificamerican.com/author/peter-bruce/) as a new way to teach Statistics to social science students. Of course, social science students aren't the only ones who can benefit. Anyone who wants to learn statistics will find that the resampling approach helps in understanding statistical concepts from the simplest to the most difficult. In addition, professionals who want to use resampling, bootstrapping, or Monte Carlo simulations will find Statistics101 helpful. More information at https://statistics101.sourceforge.io/ -
6
SGraph
Create charts by retrieving data from Stata on-the-fly
SGraph is a web application that interacts with Stata for creating graphs. It is a demo application that demostrates how to exploit SWire for creating web applications that communicate with Stata. SGraph is an open source project and you can download the code from the project web site web site or try the app on-line here: http://sgraph-with-swire.sourceforge.net/ The source project is hosted in GitHub: https://github.com/lomagno/sgraph -
7
TXM
Unicode XML TEI text analysis platform
TXM is a free and open-source cross-platform Unicode & XML based text analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org). ... -
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The Simplest Manual Counter
Manual counter with the keyboard or the mouse on images
The only open source counter to count any items the simplest and easiest way with the keyboard, or the mouse specifically on images. After associating a key to each item, or a predefined graphical symbol for images, pressing the key or clicking on the image increments its associated counter, and displays (for the images) the symbol at the mouse's pointer location. Such a project is so simple a child could use it! -
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AlphaPlot
Interactive scientific graphing and data analysis software.
Alpha Plot can generate different types of 2D and 3D plots (such as line, scatter, bar, pie, and surface plots) from data that is either imported from ASCII files, entered by hand, or calculated using formulas. The data is held in spreadsheets which are referred to as tables with column-based data (typically X and Y values for 2D plots) or matrices (for 3D plots). -
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10
ADaMSoft
Open Source and data mining software
ADaMSoft is a free and Open Source Data Mining software developed in Java. It contains data management methods and it can create ready to use reports. It can read data from several sources and it can write the results in different formats. -
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StatisticsTables
This is a Java APP for Probability and Statistics Tables
If you have Windows or a MAC , you can setup and run Statistics Tables with very little effort. You can use jdistabs in place of paper Probability Tables to get electronic probabilities. You can also download the Java code used to create this APP. There are 2 zips. One is for a working windows APP, and the other with complete code and file structure. I used Eclipse to develop the APP. -
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Chuck Coleman's SAS Codes
SAS Codes
...Directories under "Files" with descriptions: NESUG 2014: "A Fast, High-Precision Implementation of the Univariate One-Parameter Box-Cox Transformation Using the Golden Section Search in SAS/IML®" SESUG 2017: "Decomposing the R-squared of a Regression Using the Shapley value in SAS®" SESUG 2019: "Conditionally Executing Data Steps and Statements Based on the Presence of Variables in a SAS® Dataset" GASP 2020: "Online Winsorization of the Survey of Construction’s Price Estimates" My SESUG 2015 materials can also be found in my project "constrainingarrays" at https://sourceforge.net/projects/constrainingarrays/. -
13
gsasnp2
PubMed ID: 29562348 / DOI: 10.1093/nar/gky175
* GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data... -
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Vytics Community
Query and plot data in seconds (Excel, CSV, SQL and NoSQL DBMS)
Vytics lets you query and plot csv data, Excel files, databases (SQL and NoSQL). You can also organize your queries, data and graphs into reports and projects. -
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Charting tools, backtesting tools, and data visualization tools for the most popular cryptocurrencies.
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TimescapeGlobal
a space-time interpolation geostatistical tool
...This tool is a free, open-source software, based on a generalization of the Inverse Distance Weighted algorithm. It outputs three-dimensional, layered discrete models from which time series and equal-time GIS Grid layers can be extracted. -
17
QMinim
A web-based minimisation service
...It is an alternative to randomization, with the advantage of balancing arms of trial with respect to preselected prognostic factors. All aspects of minimization procedure including treatments, factors, minimization protocole, and including a preload can be customized using QMinim. -
18
SWire
A Stata plugin for connecting Stata with other software
SWire is a software interface enabling us to query Stata for the executing of basic operations like reading or writing data. The core of SWire is a Java plugin which functions as a server and it can be queried by using the HTTP protocol. SWire is in essence a wrapper around the Stata-Java API and all the functions relating to this API can, therefore, be externally called by clients. SWire can be interrogated on a local network and it accepts AJAX queries, thus enabling the development of web applications which provide the user with graphical user interfaces. ... -
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SWordy
An Office add-in which allows data import from Stata into Word
SWordy is an Office add-in which allows data import from Stata into a Microsoft Word document. SWordy can also create automatic documents, namely Word documents which can automatically update their data by retrieving it from Stata. -
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SWire Web Apps Collection
A collection of web apps interacting with Stata through SWire
The SWire Web App Collection (SWAC) is a collection of demo web applications which explain how to use SWire and SWire4js in developing SWire web applications, namely, software which runs on web browsers and interacts with Stata. SWAC is an open source project and you can download the code from the project web site web site or try the apps on-line here: http://swire-web-apps-collection.sourceforge.net/ -
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A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice. The code is open source but you are requested to give credits if used. Additionally, it also has some useful functions for exporting and generating publication quality figures for different kind of figures in MATLAB
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PMM-Lab
Predictive Microbial Modeling plug-in for KNIME
...Altogether these components are designed to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM). Users can apply PMM-Lab to proprietary or public data and create bacterial growth / survival / inactivation models. The framework can easily be extended to other model types, e.g. growth/no-growth boundary models. PMM-Lab has been initiated and provided by the Federal Institute for Risk Assessment - BfR (Berlin, Germany). The software is in Beta status. ... -
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SWire4R
An R package enabling R to interact with Stata for data exchange
Swire4R is an R package for exchanging data between R and Stata. SWire4R uses SWire for connecting R to Stata. SWire is a plugin for Stata >=13 which acts like a server: client applications can query SWire for interacting with Stata. SWire4R acts like a client application for Swire, providing the user with various basic functions for retrieving data from Stata and exporting data to Stata. SWire4R must be compiled by R. For more information about SWire, visit https://sourceforge.net/projects/swire/ -
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runjags
The 'runjags' R package and standalone JAGS extension module
This package provides high-level interface utilities for MCMC models via Just Another Gibbs Sampler (JAGS), facilitating the use of parallel (or distributed) processors for multiple chains, automated control of convergence and sample length diagnostics, and evaluation of the performance of a model using drop-k validation or against simulated data. Template model specifications can be generated using a standard lme4-style formula interface to assist users less familiar with the BUGS syntax. A JAGS extension module provides additional distributions including the Pareto family of distributions, the DuMouchel prior and the half-Cauchy prior. -
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Corbata
CORe microBiome Analysis Tools
Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.
