Showing 67 open source projects for "5-5-5-5-5-5-5"

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  • 1
    Tools to analyse and use passport data for biological collections.
    Downloads: 0 This Week
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  • 2
    Robust Correlation Toolbox

    Robust Correlation Toolbox

    Free Matlab toolbox to compute robust correlations

    The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool
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  • 3

    DyMMM

    Dynamic Multispecies Metabolic Modeling framework

    The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition...
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  • 4

    MCPerm: Monte Carlo SNP permutation

    Monte Carlo permutation method for SNP multiple test correlation

    MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive,...
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  • 5
    ShiVaSmiles

    ShiVaSmiles

    A slick interface to see various scale analysis algorithms in action.

    The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content !
    Downloads: 0 This Week
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  • 6
    The Automated Parameter Estimation and Model Selection Toolkit is a fast, parallelized MCMC engine written in C for Bayesian inference (parameter estimation and model selection).
    Downloads: 0 This Week
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  • 7
    mlpy

    mlpy

    Machine Learning Python

    mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X.
    Downloads: 3 This Week
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  • 8
    CarArrivalSimulation
    Simulate toll gates queues on Mathematica 7.
    Downloads: 0 This Week
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  • 9
    A collection of compact, powerful programs and functions, written in C, for the analysis and transformation of data. No object or structure dependencies, no fancy interfaces - just good tools.
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  • 10
    A population-based method for DNA copy number analysis: recurrent copy number aberration indentification in multiple samples (with no need of single-sample calling). Developed for a quick analysis of high resolution and large population data.
    Downloads: 0 This Week
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  • 11
    clusterCons
    An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.
    Downloads: 0 This Week
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  • 12
    LCMStats - An R package
    An R package for detailed inspection and analysis of LCMS data. An R package developed by Sukhdeep Singh at Department of Surgery and Cancer, Imperial College London,UK.
    Downloads: 0 This Week
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  • 13
    Software made available by the Residual Analysis blog, primarily having to do with anthropogenic global warming, e.g. GHCN Processor.
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  • 14
    Software to cluster protein sequences into functionally similar groups. Journal reference: http://bioinformatics.oxfordjournals.org/cgi/content/short/24/16/1765
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  • 15
    Python module to track the overall median of a stream of values "on-line" in reasonably efficient fashion.
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  • 16
    The Java class library, that contains classes for calculation of different mathematical relations between object and number sequences and sets: Kendall distance, Spearman distance, similarity measure, L1 distance and others.
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  • 17
    Math.NET aims to provide a self contained clean framework for symbolic mathematical (Computer Algebra System) and numerical/scientific computations, including a parser and support for linear algebra, complex differential analysis, system solving and more
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