Open Source Java Statistics Software - Page 3
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Java Statistics Software
View 202 business solutionsBrowse free open source Java Statistics Software and projects below. Use the toggles on the left to filter open source Java Statistics Software by OS, license, language, programming language, and project status.
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coalescent
Software tool for Research in Computational Population Genetics
Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT -
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covid19-de-stats
Statistiken zu COVID-19 in Deutschland
Tägliche Statistiken und zugehörige Programme zur Darstellung der Verbreitung von COVID-19 in Deutschland. -
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Optimization tool that mimics the darwinian reproduction, selection, mutation process. It has 2 components: the optimization algorithm and an interpretar to define function to optimize and constraints. It is all written in java (netbeans).
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The final build of this software now is distributed in R, embedded in "RedeR': an R/Bioconductor package for hierarchical and nested network analysis... more about RedeR: http://bioconductor.org/packages/2.9/bioc/html/RedeR.html
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fantail-mlkit
The fantail machine learning toolkit (Moved)
Moved to https://github.com/quansun/fantail-ml -
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A software framework to build maps for Neurospora crassa genome based on probabilistic models of meiotic recombination. A netbeans platform application is built to incorporate the computations. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/GENOMEMAP
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jarta
A Java library to model and fit ARTA processes.
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knowceans
Utility classes from maps to search engine to random samplers
Collection of several multi-purpose Java libraries. --- knowceans-tools = collection of Java utility classes. --- Highlights: --- org.knowceans.util: IndexQuickSort, TableList: apply order of one array/list to others +++ Vectors, ArrayUtils: array convenience +++ RandomSamplers, CokusRandom, ArmSampler, Densities: random sampling and distributions +++ Arguments: command line parser +++ StopWatch, Which, ExternalProcess: runtime stuff +++ ParallelFor: OpenMP workalike +++ PatternString, NamedGroupRegex: regex convenience --- org.knowceans.corpus: CorpusSearcher: full-text search engine +++ LabelNumCorpus: svmlight corpus storage and filtering +++ NIPS corpus with text, authors, labels and citations --- org.knowceans.map: InvertibleHashMultiMap, BijectiveHashMap: implement n:m and 1:1 relations. --- Other libs: knowceans-arms = port of the Adaptive Rejection Metropolis Sampler (ARMS) for arbitrary distributions +++ lda-j = port of lda-c, implementing Latent Dirichlet Allocation (LDA) -
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modnlp-plugins
External plugins for modnlp/teccli
This is a general project for modnlp/teccli plugins, with focus on text visualizaton. -
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A Matlab toolbox for interfacing with the pure JAVA numerical library Snifflib. This toolbox provides convenience m-files for interoperability with Snifflib from within an active Matlab session running a JAVA virtual machine.
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spectralHMM
A spectral method for inferring selection from time series data
***WARNING*** This software was migrated to: https://github.com/popgenmethods/spectralHMM Support and updates will only be available at this new address. This software implements the algorithms described in the following paper: Steinrücken, M., Bhaskar, A. and Song, Y.S. A novel spectral method for inferring general diploid selection from time series genetic data. Annals of Applied Statistics, Vol. 8, No. 4 (2014) 2203-2222 -
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