Showing 14 open source projects for "two"

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  • 1
    gsasnp2

    gsasnp2

    PubMed ID: 29562348 / DOI: 10.1093/nar/gky175

    * GSA-SNP2 is a successor of GSA-SNP (Nam et al. 2010, NAR web server issue). GSA-SNP2 accepts human GWAS summary data (rs numbers, p-values) or gene-wise p-values and outputs pathway genesets ‘enriched’ with genes associated with the given phenotype. It also provides both local and global protein interaction networks in the associated pathways. * Article: SYoon, HCTNguyen, YJYoo, JKim, BBaik, SKim, JKim, SKim, DNam, "Efficient pathway enrichment and network analysis of GWAS summary data...
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  • 2
    PlanetPack

    PlanetPack

    Radial-velocity & transits analysis tool for exoplanets

    ...The description of the main theoretic concepts, statistical methods and algorithms that PlanetPack implements, is given in the following refereed papers: R.V. Baluev 2013, Astronomy & Computing, V. 2, P. 18 (initial release); R.V. Baluev 2018, Astronomy & Computing, V. 25, P. 221 (update 3.0). The technical manual explaining the details of the practical use is available in the download archive here (see the /doc/ subfolder).
    Downloads: 1 This Week
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  • 3
    fcGENE: Genotype  format converter

    fcGENE: Genotype format converter

    Format converting tool for genotype Data (e.g.PLINK-MACH,MACH-PLINK)

    Main application is twofold: first to convert genotype SNP data into formats of different imputation tools like PLINK MACH, IMPUTE, BEAGLE and BIMBBAM, second to transform imputed data into different file formats like PLINK, HAPLOVIEW, EIGENSOFT and SNPTEST. Readable file formats: plink-pedigree (ped and map), plink-raw, plink-dosage, mach , minimac, impute, snptest, beagle and bimbam. Similarly all kinds of imputation of outputs are also accepted. Formats which can be generated by...
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  • 4

    MandelbrotExplorer

    A program to calculate and represent the Mandelbrot set

    ...The user disposes of a graphical interface to control the program and modify conveniently some parameters, like the XY-scales, the XY map area, the Julia seed for the complex series iteration of Z(n+1)=Z(n)^2+a, being Z(0)=(X0,Y0) the seed, and "a in XY" the points to be calculated. The user can enter (among other parameters) the desired convergence-radius R for the series, and/or the number of maximal iterations N for the generator-equation in Z.
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  • 5
    Community Detection Modularity Suite

    Community Detection Modularity Suite

    Suite of community detection algorithms based on Modularity

    ... - Main suite containing three community detection algorithms based on the Modularity measure containing: Geodesic and Random Walk edge Betweenness [1] and Spectral Modularity [2]. Collaborator: Theologos Kotsos. [1] M. Newman & M. Girvan, Physical Review, E 69 (026113), 2004. [2] M. Newman, Physical Review E, 74(3):036104, 2006. [3] B. Ball et al, An efficient and principled method for detecting communities in networks, 2011. The suite is based upon the fast community algorithm implemented by Aaron Clauset <aaron@cs.unm.edu>, Chris Moore, Mark Newman, and the R IGraph library Copyright (C) 2007 Gabor Csardi <csardi@rmki.kfki.hu>. ...
    Downloads: 0 This Week
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  • 6
    phcfM

    phcfM

    R package for modelling anthropogenic deforestation

    ...The two functions use embedded Gibbs samplers written in C++ with the Scythe statistical library to reduce computational time.
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  • 7
    allink

    allink

    Software for data analysis, image processing, simulations, solver.

    Collection of utilities based on two basics classes: Matematica and VarData. Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures.
    Downloads: 0 This Week
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  • 8
    The project simulates a generic agent based market model. The aim is to explore intimately, by simulation, the process of price formation and the market microstructure.
    Downloads: 0 This Week
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  • 9
    ...Calculates the probability that unit X breaks unit Y. Has the ability to calculate more than one round, e.g. calculate the probability that unit X breaks unit Y in round 2.
    Downloads: 0 This Week
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  • 10
    M-S Lab

    M-S Lab

    Math-Statistics LABoratory

    M-S Lab is a free software for statistical computing and graphics. M-S Lab is available in two distributions: The built-in language support is implemented in "Own" version. And for users who like to code in Lua scripting language we made a "Lua" version. Both versions are available for free download in the Downloads page.
    Downloads: 0 This Week
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  • 11
    test *only* 1) nr3, Poisson distribution 2) mixture model
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  • 12
    Sage Bionetworks
    Opensource software projects for genetics and genomics from Sage Bionetworks.
    Downloads: 0 This Week
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  • 13
    Pi-VisualR

    Pi-VisualR

    Qt-based C++ GUI programming interface to R

    VisualR is a (currently) Windows only C++ GUI programming interface to R. It allows creating full featured applications that complelely control R and serves as a GUI programming toolkit that can be controlled from inside R code.
    Downloads: 0 This Week
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  • 14
    Data Mining Platform is a platform for data mining and analysis. It contains many of the new and sophisticated methods such as kernel-based classification, two-way clustering, bayesian networks, pattern recognition for time series analysis and many other
    Downloads: 0 This Week
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