Showing 3 open source projects for "kernel-br"

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  • 1
    riboshape

    riboshape

    Predicting ribosome footprint profile shapes from transcript sequences

    Riboshape is a suite of algorithms to predict ribosome footprint profile shapes from transcript sequences. It applies kernel smoothing to codon sequences to build predictive features, and uses these features to builds a sparse regression model to predict the ribosome footprint profile shapes. Reference: Liu, T.-Y. and Song, Y.S. Prediction of ribosome footprint profile shapes from transcript sequences. Proceedings of ISMB 2016, Bioinformatics, Vol. 32 No. 12 (2016) i183-i191.
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  • 2
    Adaptive Gaussian Filtering

    Adaptive Gaussian Filtering

    Machine learning with Gaussian kernels.

    Libagf is a machine learning library that includes adaptive kernel density estimators using Gaussian kernels and k-nearest neighbours. Operations include statistical classification, interpolation/non-linear regression and pdf estimation. For statistical classification there is a borders training feature for creating fast and general pre-trained models that nonetheless return the conditional probabilities.
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  • 3
    Data Mining Platform is a platform for data mining and analysis. It contains many of the new and sophisticated methods such as kernel-based classification, two-way clustering, bayesian networks, pattern recognition for time series analysis and many other
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