Showing 284 open source projects for "java open source"

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  • 1

    wavg

    Calculator of weighted averages.

    A simple program to calculate weighted averages. It is developed in C++ using Qt. So far I tried to compile it only on Linux. It can also generate a graph of the data and the average, using gnuplot.
    Downloads: 0 This Week
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  • 2

    MCPerm: Monte Carlo SNP permutation

    Monte Carlo permutation method for SNP multiple test correlation

    MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive,...
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  • 3
    C++ Airline Travel Market Simulator
    That project aims at studying and comparing typical airline IT methods, for instance RM-related algorithms. It works from a Unix/Linux/Mac command-line, and exposes basic APIs. It is being developed in C++, with Python wrappers for some components.
    Downloads: 0 This Week
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  • 4
    RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
    Downloads: 0 This Week
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  • 5
    This is a Matlab software package for single molecule FRET data analysis.
    Downloads: 0 This Week
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  • 6

    Black Hole Cortex

    Sphere surface layers of visual cortex approach maximum info density

    Near the surface (even horizon) of a black hole, there is maximum information density in units of squared plancks (and some translation to qubits). Similarly, our imagination is the set of all possible things we can draw onto our most dense layer of visual cortex in electricity patterns. Bigger layers have more neurons to handle those possibilities. A Black Hole Cortex is a kind of visual cortex that has density of neuron layers similar to density at various radius from a black hole. What we...
    Downloads: 0 This Week
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  • 7
    GUANO

    GUANO

    GUANO - Graphical User interface for performing ANalysis Of variance

    Free and open source standalone program capable of conducting between, within, and mixed analyses of variance (ANOVA). Provides a simple graphical user interface for specifying analyses and interaction plots (analyses performed by http://code.google.com/p/pyvttbl/). Features: - Capable of high order factorial designs (> 2 factors) - Within and mixed analyses of variance provide corrections for violations of sphericity (Huynh-Feldt, Greenhouse-Geisser, Box) - A variety of data transformations can be applied (log10, reciprocal, arcsine, square-root, and Windsor) - Generalized eta-squared measures of effect size - Post-hoc power analysis (should match G*Power) - Outputs include tables of estimated marginal means - Up to 4-way interaction plots with errorbars (png, svg) - Confidence intervals account for within-subject variability (where applicable; Loftus and Masson, 1994) - Non-proprietary HTML output files - Non-proprietary codebase Gotchas: - Assumes balanced designs
    Downloads: 0 This Week
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  • 8
    imDEV

    imDEV

    Tools for multivariate data visualization, exploration and analysis.

    You may also like some newer work: http://createdatasol.com/ Project imDEV is an application of RExcel, which seamlessly integrates Excel and R for tasks focused on multivariate data visualization, exploration, and analysis. Interactive modules for dimensional reduction (imPCA), prediction (imPLS), feature selection, analysis of correlation (imCorrelations) and generation of networked structures (imGraph) provide an integrated environment for systems level analysis of multivariate data.
    Downloads: 0 This Week
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  • 9
    A new floating-point arithmetic which has uncertainty-tracking and undertainty-bounding capability, and algorithms to test this arithmetic. The code is in C++ (Visual Studio Express 2008)
    Downloads: 0 This Week
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  • 10
    Statistical models with python using numpy and scipy. Currently covers linear regression (with ordinary, generalized and weighted least squares), robust linear regression, and generalized linear model, discrete models, time series analysis and other statistical methods.
    Downloads: 2 This Week
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  • 11

    CvHMM

    Discrete Hidden Markov Models based on OpenCV

    This project (CvHMM) is an implementation of discrete Hidden Markov Models (HMM) based on OpenCV. It is simple to understand and simple to use. The Zip file contains one header for the implementation and one main.cpp file for a demonstration of how it works. Hope it becomes useful for your projects.
    Downloads: 0 This Week
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  • 12

    HMMLab

    A Hidden Markov Model editor with support to HTK

    HMMLab is a Hidden Markov Model editor oriented on HMMs for speach recognition. It can create, edit, train and visualize HMMs. HMMLab supports loading/saving HMMs from/to HTK files.
    Downloads: 0 This Week
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  • 13
    ShiVaSmiles

    ShiVaSmiles

    A slick interface to see various scale analysis algorithms in action.

    The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content !
    Downloads: 0 This Week
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  • 14
    Estadistica Facil
    Herramienta gratuita para crear estadísticas de forma sencilla. Estadística Fácil es una aplicación desarrollada para permitirte crear tablas al estilo de las de Excel.
    Downloads: 0 This Week
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  • 15
    The Automated Parameter Estimation and Model Selection Toolkit is a fast, parallelized MCMC engine written in C for Bayesian inference (parameter estimation and model selection).
    Downloads: 0 This Week
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  • 16
    Scale Assistant is an OpenOffice.org extension designed to give OOo Calc additional power that meet some needs of social sciences researcher.
    Downloads: 0 This Week
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  • 17
    Nen

    Nen

    neural network implementation in java

    3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM. Quick Start: "java -jar nen.jar"
    Downloads: 0 This Week
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  • 18
    A statistics extension for Open Office with a feel of SPSS. Primarily meant for students of social sciences as well as other in a need of easy-to-use statistics software.
    Downloads: 0 This Week
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  • 19
    mlpy

    mlpy

    Machine Learning Python

    mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X.
    Downloads: 2 This Week
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  • 20
    StatsCollect
    StatsCollect is a little framework gathering statistics from external sources (social networks, web sites...), stored in pluggable backends. It can be very easily extended thanks to its plugins (currently include Facebook, Myspace, Youtube, Google).
    Downloads: 0 This Week
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  • 21

    libcomposition

    A C library to handle compositional (=closed) data, like proportions.

    Inspired by Aitchison 2003 (http://www.amazon.com/The-Statistical-Analysis-Compositional-Data/dp/1930665784/) this library aims to make compositional data analysis rigorously.
    Downloads: 0 This Week
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  • 22

    Noisy Channel Simulator

    Demonstrate errors in transmission of a file over a noisy channel.

    This program was written to dimonstrate errors in transmission for a presentation on Claude Shannon's Noisy Channel Coding Theorem. It takes an input file, the probability of a bit being flipped, and, if specified, the size of the header of the file. The program was intended to take monochrome bitmap files as input, so that each bit refers to a pixel in the image and thus, it would be easy to see errors in the output file, as some of the pixels would be flipped; however, it will work on any...
    Downloads: 0 This Week
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  • 23

    knowceans

    Utility classes from maps to search engine to random samplers

    Collection of several multi-purpose Java libraries. --- knowceans-tools = collection of Java utility classes. --- Highlights: --- org.knowceans.util: IndexQuickSort, TableList: apply order of one array/list to others +++ Vectors, ArrayUtils: array convenience +++ RandomSamplers, CokusRandom, ArmSampler, Densities: random sampling and distributions +++ Arguments: command line parser +++ StopWatch, Which, ExternalProcess: runtime stuff +++ ParallelFor: OpenMP workalike +++ PatternString,...
    Downloads: 0 This Week
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  • 24
    This material enables IBM SPSS Statistics users to run code written in the R language inside Statistics. Additional free items for R in Statistics and other materials are available from the SPSS Community at www.ibm.com/developerworks/spssdevcentral
    Downloads: 8 This Week
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  • 25
    CarArrivalSimulation
    Simulate toll gates queues on Mathematica 7.
    Downloads: 0 This Week
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