Open Source Statistics Software - Page 7
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HMMLab
A Hidden Markov Model editor with support to HTK
HMMLab is a Hidden Markov Model editor oriented on HMMs for speach recognition. It can create, edit, train and visualize HMMs. HMMLab supports loading/saving HMMs from/to HTK files. -
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HPCall
Improved base-calling for homopolymer-sensitive next-gen data.
The current software contains the implementation for the 454 pyrosequencing platform. -
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An application built onto the Open Table Explorer engine for the acquisition and analysis of home energy consumption and solar energy production.Moved to github as Open Table Explorer
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Hrothgar Parallel LM/MCMC Minimizer
A versatile MCMC and downhill optimization engine
Hrothgar is a parallel minimizer and Markov Chain Monte Carlo generator by Andisheh Mahdavi of San Francisco State University. It has been used to solve optimization problems in astrophysics (galaxy cluster mass profiles) as well as in experimental particle physics (hadronic tau decays). It is probably adaptable enough to be applied to your merit function if you can write it in C. -
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This program generates customizable hyper-surfaces (multi-dimensional input and output) and samples data from them to be used further as benchmark for response surface modeling tasks or optimization algorithms.
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Hyperspectral data analysis in R
Handling and basic analysis of hyperspectral data in R
The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal. -
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Immutable Sparse Wave Trees (WaveTree)
Realtime bigdata tool for bit strings up to 2^63 based on AVL forest
Realtime bigdata tool at the bit level based on immutable AVL forest which can be run in memory or, in future versions, as a merkle forest like a blockchain. Main object is a sparse bit string (Bits) that efficiently scales up to 2^63 bits normally compressed as forest has duplicated substrings. Bits objects support reading bit, byte, short, int, or long (Java primitives) at any bit index in 64 bit range. Example: instead of building a class to hold a header and then data, represent all of that as Bits, subranges of them, and ints for sizes of its parts. Expansion ability for other kinds of compression, since Bits is a Java interface. Main functions on bits are substring, concat, number of 0 or 1 bits, and number of bits (size). All those operations can be done millions of times per second regardless of size because the AVL forest reuses existing branches recursively. Theres a scalar (originally for copy/pasting subranges of sounds) and a bit Java package. Sparse n dimensional matrix. -
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Infinite Compression
ASYMPTOTICALLY RECURSIVE DATA COMPRESSION (v0.0.0.1)
ASYMPTOTICALLY RECURSIVE DATA COMPRESSION (v0.0.0.1) -
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IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
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JDistlib
Java library of statistical distribution
A Java package that provides routines for various statistical distributions. Based on R version 2.14.1 (continuously updated; current as of R v3.3.0). The major difference is that JDistlib is thread safe. The library contains the density (pdf), cumulative (cdf), quantile, and random number generator (RNG) routines of the following distributions: Ansari, Beta, Binomial, Cauchy, Chi square, Exponential, Fisher's F, Gamma, Geometric, Hypergeometric, Kendall, Logistic, Log normal, Negative binomial, Noncentral beta, Noncentral chi square, Noncentral f, Noncentral t, Normal, Poisson, Sign Rank, Spearman, Student's T, Tukey, Uniform, Weibull, Wilcoxon, and many more. Normality tests, such as: Kolmogorov-Smirnov, Anderson-Darling, Cramer-Von Mises, D'Agostino-Pearson, Jarque Bera, Kolmogorov-Lilliefors, Shapiro-Francia, Shapiro-Wilk. And many others. -
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JMEScriptGUI
Pequeño IDE para el lenguaje JMEScript.
Con este IDE podrá probar cualquier script escrito en JMEScript con toda la funcionalidad del lenguaje, incluidos gráficos 2D y conexión MySQL. La versión para Android, en este momento, tiene menos funcionalidad y ejecuta la versión 0.1 de JMEScript. Parser JME y lenguaje JMEScript en https://sourceforge.net/projects/jme/ Documentación en https://morenobarrientos-jme.site44.com/ Código fuente y UDL para Notepad++ en pestaña 'FILES' -
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A set of components for doing text mining in Java. The target audience are other text mining developers who can use or extend these components.
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KeplerDB
Timeseries databases management system
KeplerDB is a temporal database to store time/value entries where the type of value could be integer, float/double, boolean and string. KeplerDB is dedicated to be scalable and to create clusters of server allowing the user to analyse and store massing amount of data to monitor systems like computers, clusters, building and captors or financial systems like markets and accounts. The user can use KeplerDB to make data analysis on enormous amount of data (statistics and modelling). -
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Kontinuum Calculator
Calculate various aspects of the Kontinuum RPG system.
Kontinuum is a calculator program that enables the user to calculate all probabilistic aspects of the Kontinuum RPG system, especially the dice rules. -
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The Kyoto FST Decoder is a general decoding engine for Weighted Finite State Transducers. It features flexible XML-based configuration, beam-search decoding, and is able to output separate weights for weight tuning.
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LDT
Automatic Time Series Analysis with Stationary VAR Models
LDT is designed for automatic time-series analysis. Current version focuses on stationary vector autoregressive models (VAR) and the related analyses such as forecasting and Granger causality. See the following paper for an application: See http://papers.ssrn.com/sol3/papers.cfm?abstract_id=2818213 -
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LQFB-analyser
A lqfb delegation analyser. A 3d directed weighted multi graph.
A rich client to analyse data from a liquid-feedback (http://liquidfeedback.org/) instance, for now it's a 3d graph explorer to inspect the delegations. It's an application based on the eclipse platform (indigo). To be precise its a directed weighted multi graph browser in 3d. Find out more in the wiki https://sourceforge.net/p/lqfbanalyser/wiki/Home/ . Generated reports https://sourceforge.net/p/lqfbanalyser/wiki/generated%20lqfb%20reports/ . -
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Lego Charts for Excel
Plot Excel data as photo-realistic 3D LEGO® models
Using a sequence of Open Source CAD/CAM and graphics tools, integrated through Excel macro code, "Lego Charts" extends the idea of the Excel 3-D bar chart. It allows the placement, shapes and colours of the bars to represent further dimensions to the data. The chart is presented as a photo-realistic model apparently constructed out of LEGO® [1] bricks. The downloaded package consists of an Excel template to create the charts, an extensive installation and user guide, and two fully-worked samples. Creating eye-catching Lego Charts is easy, fun, and rewarding! Platform: Windows 32 bit (XP onwards) with Microsoft Excel 2003 or later. For more information about Lego Charts, and how to install the package, please see the file README.txt on the the FIles page. --- [1] LEGO® and the LEGO logo are registered trademarks of The Lego Group, which does not sponsor, endorse, or authorize this software package or web page. -
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LightPCC
Parallel pairwise correlation computation on Intel Xeon Phi clusters
The first parallel and distributed library for pairwise correlation/dependence computation on Intel Xeon Phi clusters. This library is written in C++ template classes and achieves high speed by exploring the SIMD-instruction-level and thread-level parallelism within Xeon Phis as well as accelerator-level parallelism among multiple Xeon Phis. To facilitate balanced workload distribution, we have proposed a general framework for symmetric all-pairs computation by building provable bijective functions between job identifier and coordinate space for the first time. -
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This is the Linux porting of the New Seats Tramo. Developed by Gianluca Caporello. Create a new TSW (XWIN) called TS-XWin using the Lazarus IDE. A C++ Interface has been created and with the SWIG package the idea is to create a Java interface.
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M-S Lab
Math-Statistics LABoratory
M-S Lab is a free software for statistical computing and graphics. M-S Lab is available in two distributions: The built-in language support is implemented in "Own" version. And for users who like to code in Lua scripting language we made a "Lua" version. Both versions are available for free download in the Downloads page. -
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MCPerm: Monte Carlo SNP permutation
Monte Carlo permutation method for SNP multiple test correlation
MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive, especially for genome-wide association study (GWAS). To improve the calculation speed without changing the size of the TradPerm p-value, we developed a Monte Carlo permutation (MCPerm) method as an efficient alternative to TradPerm. Methods: MCPerm does not need to shuffle the original genotypes and phenotypes data. It uses Monte Carlo method, employs two-step hypergeometric distribution to generate the random number of genotypes (AA, Aa and aa) in cases and controls. -
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MORPHE
MORphological PHenotype Extraction
MORphological PHenotype Extraction (MORPHE) is a suite of automated image processing, visualization, and classification algorithms to facilitate the analysis of heritable and clonal red-to-green transitions that occurred during the growth of a colony.
