Showing 127 open source projects for "5-5-5-5-5-5-5"

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  • 1
    coalescent

    coalescent

    Software tool for Research in Computational Population Genetics

    Development of exact and approximate methods (Importance Sampling and MCMC based) for computing likelihoods under the standard population genetic models of mutation,migration & recombination. Project issues are mainatined at https://freecode4susant.atlassian.net/browse/COALESCENT
    Downloads: 0 This Week
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  • 2
    phcfM

    phcfM

    R package for modelling anthropogenic deforestation

    phcfM is an R package for modelling anthropogenic deforestation. It was named after the REDD+ pilot-project 'programme holistique de conservation des forêts à Madagascar'. phcfM includes two main functions: (i) demography(), to model the population growth with time in a hierarchical Bayesian framework using population census data and Gaussian linear mixed models and (ii) deforestation(), to model the deforestation process in a hierarchical Bayesian framework using land-cover change data and...
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  • 3
    Statcato
    Statcato is a Java software application for elementary statistics. Its features include data and graph generation, probability distributions, descriptive statistics, confidence intervals, hypothesis tests, correlation, regression, and analysis of var
    Downloads: 7 This Week
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  • 4
    Soothsayer

    Soothsayer

    Capacity exhaustion prediction from RRD files

    Predict if storage utilised will reach capacity within defined period (maximum 5 years), using recent historical data contained within RRD files (maximum -1 year). Produces HTML (or partial HTML) and, more importanly, a PNG RRD Graph showing the prediction and, should the capacity be reached, an annotation indicating when. Optionally email out exception notices.
    Downloads: 0 This Week
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  • 5
    IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
    Downloads: 0 This Week
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  • 6

    GENIE (GEne-geNe IntEraction)

    GPU based Parallel Gene-Gene Interaction Analysis

    Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic...
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  • 7

    FreDec

    Parallelized FREquency DEComposer algorithm

    This is a parallelized algorithm performing a decomposition of the time-series data into a number of sinusoidal components, disentangling them from the white Gaussian noise. The algorithm analyses all suspicious frequencies, including the ones that look like an alias at a glance, but may become preferable later. After selection of the initial frequency candidates, the algorithm passes through all their possible combinations and estimates their multi-frequency statistical significance. In the...
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  • 8
    EnvStats

    EnvStats

    An R Package for Environmental Statistics

    EnvStats is an R package for environmental statistics. It is the open-source successor to the commercial module for S-Plus© called "EnvironmentalStats for S-Plus", which was first released in April, 1997. The EnvStats package, along with the R software environment, provides comprehensive and powerful software for environmental data analysis. EnvStats brings the major environmental statistical methods found in the literature and regulatory guidance documents into one statistical package,...
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  • 9

    StochDecomp

    User Manual describing theory behind the package, installation instruc

    Stochasticity is an indispensable aspect of biochemical processes at the cellular level. Studies on how the noise enters and propagates in biochemical systems provided us with nontrivial insights into the origins of stochasticity, in total however they constitute a patchwork of different theoretical analyses. Here we present a flexible and generally applicable noise decomposition tool, that allows us to calculate contributions of individual reactions to the total variability of a system’s...
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  • 10
    Myrtle

    Myrtle

    A simple programmable spreadsheet for learning statistics.

    Myrtle is a simple programmable spreadsheet and statistical analysis software specifically designed for learning statistics. It provides the standard spreadsheet functionality one would expect like multiple tabbed sheets, relative and absolute row and column referencing in formulas, and a large catalog of built-in functions. Functions specific to logic and computer science, mathematics, probability, and statistics are available. Student's can easily create, customize, and update plots and...
    Downloads: 0 This Week
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  • 11
    x2x (xbit2xbyte\xbyte2xbit)

    x2x (xbit2xbyte\xbyte2xbit)

    Converts xbits to xbytes, and back again if needed.

    xbit2xbyte and xbyte2xbit are designed as sample programs for programmers new to C# as well as a learning tool for the author. These two programs also fulfilled a genuine need to convert to xbits (megabit usually) to xbytes (megabytes, again usually) when dealing with things such as cartridge sizes ,which are generally expressed in megabits, and something the author frequently encountered. Thus, xbit can be used to convert whatever bit (mega, giga, etc.) to whatever byte (again, mega,...
    Downloads: 0 This Week
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  • 12
    Lego Charts for Excel

    Lego Charts for Excel

    Plot Excel data as photo-realistic 3D LEGO® models

    Using a sequence of Open Source CAD/CAM and graphics tools, integrated through Excel macro code, "Lego Charts" extends the idea of the Excel 3-D bar chart. It allows the placement, shapes and colours of the bars to represent further dimensions to the data. The chart is presented as a photo-realistic model apparently constructed out of LEGO® [1] bricks. The downloaded package consists of an Excel template to create the charts, an extensive installation and user guide, and two fully-worked...
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  • 13

    Eve Targeting Speed Calculator

    Targeting Speed Calculator for Eve Online

    Calculates Targeting speed from Scan Resolution and Signature Radius Signature Analysis is calculated as lvl5 Sensor Booster calculated as t2 with Scan Resolution script Sensor Amplifier calculated as t2
    Downloads: 0 This Week
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  • 14
    R packages supporting parallel computing.
    Downloads: 0 This Week
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  • 15

    dAnalytics

    dAnalytics is a software made for education in discriminant analysis.

    dAnalytics is a software made for educational purposes to work with discriminant analysis. It's a very simple calculator over bi-dimensional populations. You input a file with two columns (one for each variable) and tryout different separations of populations (blue and red) and analyze it's efficiency by observing the eigen value result for the attempted separation. It also gives many information about the statistics both of the input and the separated populations. There's a documentation...
    Downloads: 0 This Week
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  • 16
    Command line fibonacci series calculation program.
    Downloads: 0 This Week
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  • 17
    Binomial Distribution Calculator

    Binomial Distribution Calculator

    A simple to use Binomial Distribution Calculator.

    A simple to use binomial distribution calculator: Just enter the sufficient data like number of trials, probability and number of successes. You can display the calculated data in a table or even graphically. Simultaneously, this application computes the expected value and the standard deviation. To use this app you need to have .NET Framework 4 installed. Contact me: lambdapew-dev@yahoo.de
    Downloads: 0 This Week
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  • 18
    Tools to analyse and use passport data for biological collections.
    Downloads: 0 This Week
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  • 19
    Robust Correlation Toolbox

    Robust Correlation Toolbox

    Free Matlab toolbox to compute robust correlations

    The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool
    Downloads: 0 This Week
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  • 20

    DyMMM

    Dynamic Multispecies Metabolic Modeling framework

    The Dynamic Multispecies Metabolic Modeling (DyMMM [dĭm]) framework is a mathematical modeling tool that integrates multiple constraint-based metabolic models into a single dynamic community metabolic model. The DyMMM framework was formerly known as the DMMM framework. Please use the following citation for bibliographical purposes: Zhuang, K., Izallalen, M., Mouser, P., Richter, H., Risso, C., Mahadevan, R., & Lovley, D. R. (2011). Genome-scale dynamic modeling of the competition...
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  • 21

    MCPerm: Monte Carlo SNP permutation

    Monte Carlo permutation method for SNP multiple test correlation

    MCPerm: A Monte Carlo permutation method for multiple test correlation in case-control association study Traditional permutation (TradPerm) test is an important non-parametric analysis method which can be treated as the gold standard for multiple testing corrections in case-control association study. However, it relies on the original single nucleotide polymorphism (SNP) genotypes and phenotypes data to perform a large number of random shuffles, and thus it is computationally intensive,...
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  • 22
    RVASSOC is a simple program for performing various tests for association between genotypes and disease status using sequence variants from unrelated cases and controls. It was designed to accommodate both rare variants and missing genotypes.
    Downloads: 0 This Week
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  • 23
    GUANO

    GUANO

    GUANO - Graphical User interface for performing ANalysis Of variance

    Free and open source standalone program capable of conducting between, within, and mixed analyses of variance (ANOVA). Provides a simple graphical user interface for specifying analyses and interaction plots (analyses performed by http://code.google.com/p/pyvttbl/). Features: - Capable of high order factorial designs (> 2 factors) - Within and mixed analyses of variance provide corrections for violations of sphericity (Huynh-Feldt, Greenhouse-Geisser, Box) - A variety of data...
    Downloads: 0 This Week
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  • 24
    FixMyNumbers

    FixMyNumbers

    regression and variance analysis quickly calculate data

    This software is designed to help student's regression and variance analysis quickly calculate data.
    Downloads: 0 This Week
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  • 25
    ShiVaSmiles

    ShiVaSmiles

    A slick interface to see various scale analysis algorithms in action.

    The Shape Visualizer is intented to be an exploratory/educational tool making it quick and easy to see how various mathematical methods perform in analysing and selecting the various patterns present on an image. The main website is built as a wiki gathering info and examples on the various implemented algorithms. The combination of the application and its wiki intend to constitute a nice little pedagogic toolkit for multiscale analysis. Feel free to contribute code or wiki content !
    Downloads: 0 This Week
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